RchiOBHm_Chr5g0023191

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
17193507 .. 17193776
270 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
ATGGCTATTAGACTTACTTGCCGTGGTGAACTGAAAATGTCGATTCTGTTGAAGAGCCAGACGTGGAGGTTAATTATAGTGACCAAGACTCGCGACTCCAAGCCCTTCTTTTTCACCTTCACCACCGTATGCGGCGTCGTTCCGGGCATTGTCAGCTATTTCATTATGCAGATCACTAACCCCGGCCACCAGGAGGTCGTGGCAGAACTCCGCCGTAAAGCCCGACCCGATGCTGTGGTACGTTTTCGTTTGGTCCAAGTCAGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.25

Weight (kDa)

10.91

Isoelectric Point (pI)

30.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 93
AciI CCGC 2 cut(s) 132, 211
AcoI YGGCCR 1 cut(s) 184
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 1 cut(s) 52
AjiI CACGTC 1 cut(s) 63
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
AoxI GGCC 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 253
AsuC2I CCSGG 2 cut(s) 144, 183
AsuHPI GGTGA 3 cut(s) 38, 106, 112
AvaII GGWCC 1 cut(s) 253
BceAI ACGGC 2 cut(s) 6, 198
BciT130I CCWGG 1 cut(s) 191
BcnI CCSGG 2 cut(s) 144, 183
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
Bme1390I CCNGG 3 cut(s) 144, 183, 191
Bme18I GGWCC 1 cut(s) 253
BmgBI CACGTC 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 253
BmrFI CCNGG 3 cut(s) 144, 183, 191
BmsI GCATC 1 cut(s) 220
BpuMI CCSGG 2 cut(s) 144, 183
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 22, 181
Bsc4I CCNNNNNNNGG 1 cut(s) 193
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 2 cut(s) 22, 181
BseLI CCNNNNNNNGG 1 cut(s) 193
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 186
BsiSI CCGG 2 cut(s) 143, 183
BslI CCNNNNNNNGG 1 cut(s) 193
BsnI GGCC 1 cut(s) 186
Bsp143I GATC 1 cut(s) 171
Bsp68I TCGCGA 1 cut(s) 93
BspACI CCGC 2 cut(s) 132, 211
BspANI GGCC 1 cut(s) 186
BspFNI CGCG 1 cut(s) 93
BspQI GCTCTTC 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 22, 181
BssMI GATC 1 cut(s) 171
BssNI GRCGYC 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 135
BstDSI CCRYGG 1 cut(s) 22
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 1 cut(s) 174
BstMBI GATC 1 cut(s) 171
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 3 cut(s) 142, 181, 189
BstUI CGCG 1 cut(s) 93
BsuRI GGCC 1 cut(s) 186
BtgI CCRYGG 1 cut(s) 22
BtrI CACGTC 1 cut(s) 63
BtuMI TCGCGA 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 253
CseI GACGC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 239
CviJI RGCY 6 cut(s) 5, 57, 103, 156, 186, 221
CviKI_1 RGCY 6 cut(s) 5, 57, 103, 156, 186, 221
CviQI GTAC 1 cut(s) 239
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
EaeI YGGCCR 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
EciI GGCGGA 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 189
FaiI YATR 3 cut(s) 77, 130, 167
FalI AAGNNNNNCTT 2 cut(s) 92, 124
Fnu4HI GCNGC 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 133
GluI GCNGC 1 cut(s) 133
HaeIII GGCC 1 cut(s) 186
HapII CCGG 2 cut(s) 143, 183
HgaI GACGC 1 cut(s) 124
Hin1I GRCGYC 1 cut(s) 135
HinfI GANTC 3 cut(s) 43, 88, 95
HpaII CCGG 2 cut(s) 143, 183
HphI GGTGA 3 cut(s) 38, 106, 112
Hpy166II GTNNAC 1 cut(s) 29
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 29
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 2 cut(s) 115, 127
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 2 cut(s) 62, 241
HpyCH4V TGCA 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpySE526I ACGT 2 cut(s) 62, 241
Hsp92I GRCGYC 1 cut(s) 135
Kzo9I GATC 1 cut(s) 171
LguI GCTCTTC 1 cut(s) 47
LpnPI CCDG 5 cut(s) 71, 156, 176, 196, 203
LweI GCATC 1 cut(s) 220
MaeII ACGT 2 cut(s) 62, 241
MaeIII GTNAC 1 cut(s) 79
MalI GATC 1 cut(s) 173
MboI GATC 1 cut(s) 171
MboII GAAGA 1 cut(s) 64
MluCI AATT 1 cut(s) 72
MlyI GAGTC 2 cut(s) 82, 89
MnlI CCTC 2 cut(s) 60, 187
MseI TTAA 1 cut(s) 71
MspI CCGG 2 cut(s) 143, 183
MspR9I CCNGG 3 cut(s) 144, 183, 191
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 153
NciI CCSGG 2 cut(s) 144, 183
NdeII GATC 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 79
NruI TCGCGA 1 cut(s) 93
PciSI GCTCTTC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 1 cut(s) 134
PleI GAGTC 2 cut(s) 82, 89
PpsI GAGTC 2 cut(s) 82, 89
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspPI GGNCC 1 cut(s) 253
RruI TCGCGA 1 cut(s) 93
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 1 cut(s) 171
Sau96I GGNCC 1 cut(s) 253
SchI GAGTC 2 cut(s) 82, 89
ScrFI CCNGG 3 cut(s) 144, 183, 191
SetI ASST 6 cut(s) 65, 71, 119, 158, 198, 244
SfaNI GCATC 1 cut(s) 220
SinI GGWCC 1 cut(s) 253
Sse9I AATT 1 cut(s) 72
SsiI CCGC 2 cut(s) 132, 211
StyD4I CCNGG 3 cut(s) 142, 181, 189
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 2 cut(s) 65, 244
TaqI TCGA 1 cut(s) 41
TasI AATT 1 cut(s) 72
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.