RchiOBHm_Chr5g0023251

CDP-diacylglycerol-inositol 3-phosphatidyltransferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
17260639 .. 17262770
2132 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 240 bp
ATGAGGATAAGCACTGCATGTCTTTTGGTAATTCTTTCACAAGTATATCGGCCTGGCTTGATTTTCCTCTCATTGCTTGCCTCAGATATTGGCAGCCACTGGATGCAGATGTACAGTACTTTCCTGTTAGGCAAGGGTAGTTACAAAGATGTGAAAGACATCACTAATTGGCTATGCTTTAAAGGGAATCAGATGTTTATGGCTTACTGCTGTGTGGCATGTGAGGTAATTCAGACTTAA

Protein Analysis

79

Amino Acids

8.97

Weight (kDa)

8.33

Isoelectric Point (pI)

23.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 113, 118
AjnI CCWGG 1 cut(s) 52
AlwNI CAGNNNCTG 1 cut(s) 99
AoxI GGCC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 54
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
BmcAI AGTACT 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 54
BmsI GCATC 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 104
Bse3DI GCAATG 1 cut(s) 71
BseBI CCWGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 71
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 105
BshFI GGCC 1 cut(s) 52
BsnI GGCC 1 cut(s) 52
Bsp1407I TGTACA 1 cut(s) 111
BspANI GGCC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 71
BsrGI TGTACA 1 cut(s) 111
BsrI ACTGG 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 116
BstAUI TGTACA 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 82
BstF5I GGATG 1 cut(s) 108
BstNI CCWGG 1 cut(s) 54
BstNSI RCATGY 2 cut(s) 21, 222
BstSCI CCNGG 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 52
BtsCI GGATG 1 cut(s) 108
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 12, 97
Cac8I GCNNGC 1 cut(s) 78
CaiI CAGNNNCTG 1 cut(s) 99
Csp6I GTAC 2 cut(s) 112, 117
CviAII CATG 2 cut(s) 18, 219
CviJI RGCY 5 cut(s) 52, 57, 96, 172, 203
CviKI_1 RGCY 5 cut(s) 52, 57, 96, 172, 203
CviQI GTAC 2 cut(s) 112, 117
DdeI CTNAG 1 cut(s) 82
DraI TTTAAA 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 52
FaeI CATG 2 cut(s) 21, 222
FaiI YATR 5 cut(s) 19, 46, 175, 200, 220
FatI CATG 2 cut(s) 17, 218
Fnu4HI GCNGC 1 cut(s) 94
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 94
HaeIII GGCC 1 cut(s) 52
Hin1II CATG 2 cut(s) 21, 222
HinfI GANTC 1 cut(s) 187
Hpy188I TCNGA 3 cut(s) 85, 192, 234
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 17, 106
HpyF3I CTNAG 1 cut(s) 82
Hsp92II CATG 2 cut(s) 21, 222
LpnPI CCDG 4 cut(s) 39, 66, 85, 137
Lsp1109I GCAGC 1 cut(s) 105
LweI GCATC 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 140
MluCI AATT 3 cut(s) 30, 166, 228
MnlI CCTC 3 cut(s) 77, 91, 217
MseI TTAA 2 cut(s) 180, 238
MspR9I CCNGG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 54
NlaIII CATG 2 cut(s) 21, 222
NspI RCATGY 2 cut(s) 21, 222
PfeI GAWTC 1 cut(s) 187
PkrI GCNGC 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 52
PstNI CAGNNNCTG 1 cut(s) 99
RsaI GTAC 2 cut(s) 113, 118
RsaNI GTAC 2 cut(s) 112, 117
SaqAI TTAA 2 cut(s) 180, 238
SatI GCNGC 1 cut(s) 94
ScaI AGTACT 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 54
SetI ASST 1 cut(s) 228
SfaNI GCATC 1 cut(s) 93
Sse9I AATT 3 cut(s) 30, 166, 228
StyD4I CCNGG 1 cut(s) 52
TaaI ACNGT 1 cut(s) 116
TasI AATT 3 cut(s) 30, 166, 228
TatI WGTACW 2 cut(s) 111, 116
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 2 cut(s) 180, 238
Tru9I TTAA 2 cut(s) 180, 238
TscAI CASTG 2 cut(s) 19, 104
TseI GCWGC 1 cut(s) 93
TspRI CASTG 2 cut(s) 19, 104
XceI RCATGY 2 cut(s) 21, 222
ZrmI AGTACT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.