RchiOBHm_Chr5g0023381
ERF Family

Phosphatidylglycerol phosphatidylinositol transfer

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
17420633 .. 17420788
156 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 156 bp
ATGACCATTTGTGAAATTCTCCATTCAATTGATGATTTCATGGTTGCCCACTCACAAGAATTACCTGGATTTACTCAACCTGGTTCGTACTCTGTTAAGATGAAGATGTATGATGGAATGAAGCAAGAGCTGACATGTATTGCCTTGCGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

51

Amino Acids

5.84

Weight (kDa)

5.4

Isoelectric Point (pI)

60.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 15
AfaI GTAC 1 cut(s) 89
AflIII ACRYGT 1 cut(s) 134
AgsI TTSAA 1 cut(s) 27
AjnI CCWGG 2 cut(s) 64, 79
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
ApoI RAATTY 1 cut(s) 15
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 2 cut(s) 66, 81
Bme1390I CCNGG 2 cut(s) 66, 81
BmrFI CCNGG 2 cut(s) 66, 81
BseBI CCWGG 2 cut(s) 66, 81
Bst2UI CCWGG 2 cut(s) 66, 81
BstNI CCWGG 2 cut(s) 66, 81
BstNSI RCATGY 1 cut(s) 138
BstSCI CCNGG 2 cut(s) 64, 79
CsiI ACCWGGT 1 cut(s) 79
Csp6I GTAC 1 cut(s) 88
CviAII CATG 2 cut(s) 40, 135
CviJI RGCY 1 cut(s) 130
CviKI_1 RGCY 1 cut(s) 130
CviQI GTAC 1 cut(s) 88
EcoRII CCWGG 2 cut(s) 64, 79
FaeI CATG 2 cut(s) 43, 138
FaiI YATR 3 cut(s) 41, 111, 136
FatI CATG 2 cut(s) 39, 134
Hin1II CATG 2 cut(s) 43, 138
Hsp92II CATG 2 cut(s) 43, 138
LpnPI CCDG 4 cut(s) 51, 66, 78, 93
MabI ACCWGGT 1 cut(s) 79
MboII GAAGA 1 cut(s) 115
MfeI CAATTG 1 cut(s) 27
MluCI AATT 3 cut(s) 15, 27, 59
MseI TTAA 1 cut(s) 96
MspR9I CCNGG 2 cut(s) 66, 81
MunI CAATTG 1 cut(s) 27
MvaI CCWGG 2 cut(s) 66, 81
NlaIII CATG 2 cut(s) 43, 138
NspI RCATGY 1 cut(s) 138
PciI ACATGT 1 cut(s) 134
PscI ACATGT 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 64, 79
PspGI CCWGG 2 cut(s) 64, 79
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SaqAI TTAA 1 cut(s) 96
ScrFI CCNGG 2 cut(s) 66, 81
SetI ASST 3 cut(s) 67, 82, 132
SexAI ACCWGGT 1 cut(s) 79
SgeI CNNG 8 cut(s) 52, 68, 77, 78, 92, 93, 137, 147
Sse9I AATT 3 cut(s) 15, 27, 59
StyD4I CCNGG 2 cut(s) 64, 79
TasI AATT 3 cut(s) 15, 27, 59
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TspDTI ATGAA 3 cut(s) 28, 116, 134
XapI RAATTY 1 cut(s) 15
XceI RCATGY 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.