RchiOBHm_Chr5g0025791

ubiquitin-NEDD8-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
19745667 .. 19748070
2404 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 528 bp
ATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACCATCACCCTTGAAGTTGAGAGCAGCGACACCATCGACAATGTCAAAGCCAAGATCCAGGTCAACAAGACTATTGATGATGATAATCTGGGAAAGATAGTATATTTCTTTCTGTTATGGAGTAAAGATTTGATTTTGATATTAGGACTCGGTTTTTGTCTCATAGGGTTTTCTTTGCTTATCCTTCTTATGAATCCAAGGGTGGACGGTGGACCTTTCTTTTTGGATAAGGAAGGCATCCCTCCTGATCAGGGAGGAACTATGATTAAGGTGAAGACTCTTACCGGGAAAGAAATTGAAATTGATATTGAACCAACTGATACCATTGACCGGATCAAGGAAAGAGTTGAGGAGAAAGAGGGCATTCCTCCAGTGCAGCAAAGGCTTATTTATGCTGGCAAGCAACTTGGAGATGACAAAACAGCTAAAGAGTACAACATTGAAGGTGGTTCTGTCCTTCATCTAGTGCTTGCACTAAGGGGTGGGAGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

175

Amino Acids

19.37

Weight (kDa)

5.0

Isoelectric Point (pI)

31.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 3 - 46 1.4e-08 Ubiquitin family
ubiquitin PF00240 100 - 170 7.2e-28 Ubiquitin family
Rad60-SLD PF11976 100 - 168 2.3e-15 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 82, 374
AfaI GTAC 1 cut(s) 467
AfiI CCNNNNNNNGG 4 cut(s) 27, 284, 363, 370
AgsI TTSAA 4 cut(s) 47, 332, 344, 476
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 1 cut(s) 458
AluI AGCT 1 cut(s) 458
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 2 cut(s) 82, 374
ApeKI GCWGC 2 cut(s) 57, 409
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
AspS9I GGNCC 1 cut(s) 245
AsuC2I CCSGG 1 cut(s) 319
AsuHPI GGTGA 2 cut(s) 31, 316
AvaII GGWCC 1 cut(s) 245
BbsI GAAGAC 2 cut(s) 38, 314
BbvI GCAGC 2 cut(s) 69, 421
BccI CCATC 2 cut(s) 44, 74
BciT130I CCWGG 1 cut(s) 92
BclI TGATCA 1 cut(s) 280
BcnI CCSGG 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 1 cut(s) 497
BisI GCNGC 2 cut(s) 58, 410
BlsI GCNGC 2 cut(s) 59, 411
Bme1390I CCNGG 2 cut(s) 92, 319
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 521
BmrFI CCNGG 2 cut(s) 92, 319
BmsI GCATC 1 cut(s) 279
BpiI GAAGAC 2 cut(s) 38, 314
BpmI CTGGAG 1 cut(s) 387
BpuMI CCSGG 1 cut(s) 319
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 230
BsaWI WCCGGW 1 cut(s) 363
Bsc4I CCNNNNNNNGG 4 cut(s) 27, 284, 363, 370
Bse1I ACTGG 1 cut(s) 404
Bse8I GATNNNNATC 1 cut(s) 117
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 230
BseGI GGATG 1 cut(s) 270
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 4 cut(s) 27, 284, 363, 370
BseNI ACTGG 1 cut(s) 404
BseRI GAGGAG 1 cut(s) 398
BseXI GCAGC 2 cut(s) 69, 421
BsgI GTGCAG 1 cut(s) 428
BsiSI CCGG 2 cut(s) 318, 364
BslI CCNNNNNNNGG 4 cut(s) 27, 284, 363, 370
BsmAI GTCTC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 396
Bsp143I GATC 3 cut(s) 87, 280, 366
BspLI GGNNCC 1 cut(s) 521
BspPI GGATC 2 cut(s) 82, 374
BsrI ACTGG 1 cut(s) 404
BssECI CCNNGG 1 cut(s) 230
BssMI GATC 3 cut(s) 87, 280, 366
BssT1I CCWWGG 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 242
BstC8I GCNNGC 3 cut(s) 430, 434, 504
BstDEI CTNAG 1 cut(s) 509
BstF5I GGATG 1 cut(s) 270
BstKTI GATC 3 cut(s) 90, 283, 369
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 3 cut(s) 87, 280, 366
BstMWI GCNNNNNNNGC 1 cut(s) 415
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 2 cut(s) 90, 317
BstV1I GCAGC 2 cut(s) 69, 421
BstV2I GAAGAC 2 cut(s) 38, 314
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BtsCI GGATG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 411
Cac8I GCNNGC 3 cut(s) 430, 434, 504
Cfr13I GGNCC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 466
CviJI RGCY 4 cut(s) 83, 418, 458, 522
CviKI_1 RGCY 4 cut(s) 83, 418, 458, 522
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 1 cut(s) 509
DpnI GATC 3 cut(s) 89, 282, 368
DpnII GATC 3 cut(s) 87, 280, 366
Eco130I CCWWGG 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 230
FaiI YATR 6 cut(s) 136, 151, 197, 224, 296, 426
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 2 cut(s) 58, 410
FokI GGATG 1 cut(s) 257
Fsp4HI GCNGC 2 cut(s) 58, 410
FspBI CTAG 1 cut(s) 497
GluI GCNGC 2 cut(s) 58, 410
GsuI CTGGAG 1 cut(s) 387
HapII CCGG 2 cut(s) 318, 364
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 3 cut(s) 180, 226, 310
HpaII CCGG 2 cut(s) 318, 364
HphI GGTGA 2 cut(s) 31, 316
Hpy166II GTNNAC 3 cut(s) 97, 238, 245
Hpy188III TCNNGA 2 cut(s) 13, 278
Hpy8I GTNNAC 3 cut(s) 97, 238, 245
HpyAV CCTTC 4 cut(s) 227, 260, 470, 500
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4V TGCA 3 cut(s) 4, 409, 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 415
HpyF3I CTNAG 1 cut(s) 509
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 3 cut(s) 87, 280, 366
LmnI GCTCC 1 cut(s) 519
LpnPI CCDG 9 cut(s) 77, 104, 107, 269, 291, 331, 377, 414, 417
Lsp1109I GCAGC 2 cut(s) 69, 421
LweI GCATC 1 cut(s) 279
MaeI CTAG 1 cut(s) 497
MalI GATC 3 cut(s) 89, 282, 368
MboI GATC 3 cut(s) 87, 280, 366
MboII GAAGA 2 cut(s) 43, 319
MflI RGATCY 1 cut(s) 87
MluCI AATT 2 cut(s) 327, 333
MlyI GAGTC 2 cut(s) 174, 304
MnlI CCTC 5 cut(s) 281, 285, 376, 385, 411
MseI TTAA 1 cut(s) 300
MspI CCGG 2 cut(s) 318, 364
MspR9I CCNGG 2 cut(s) 92, 319
Mva1269I GAATGC 1 cut(s) 396
MvaI CCWGG 1 cut(s) 92
MwoI GCNNNNNNNGC 1 cut(s) 415
NciI CCSGG 1 cut(s) 319
NdeII GATC 3 cut(s) 87, 280, 366
NlaIV GGNNCC 1 cut(s) 521
PctI GAATGC 1 cut(s) 396
PfeI GAWTC 1 cut(s) 226
PflFI GACNNNGTC 1 cut(s) 74
PkrI GCNGC 2 cut(s) 59, 411
PleI GAGTC 2 cut(s) 174, 304
PpsI GAGTC 2 cut(s) 174, 304
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 521
PspPI GGNCC 1 cut(s) 245
PsuI RGATCY 1 cut(s) 87
PsyI GACNNNGTC 1 cut(s) 74
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 2 cut(s) 58, 410
Sau3AI GATC 3 cut(s) 87, 280, 366
Sau96I GGNCC 1 cut(s) 245
SchI GAGTC 2 cut(s) 174, 304
ScrFI CCNGG 2 cut(s) 92, 319
SetI ASST 5 cut(s) 96, 250, 306, 460, 481
SfaNI GCATC 1 cut(s) 279
SinI GGWCC 1 cut(s) 245
Sse9I AATT 2 cut(s) 327, 333
SspMI CTAG 1 cut(s) 497
StyD4I CCNGG 2 cut(s) 90, 317
StyI CCWWGG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 242
TaqI TCGA 1 cut(s) 69
TasI AATT 2 cut(s) 327, 333
TatI WGTACW 1 cut(s) 465
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 1 cut(s) 411
TseI GCWGC 2 cut(s) 57, 409
TspDTI ATGAA 2 cut(s) 239, 482
TspRI CASTG 1 cut(s) 411
Tth111I GACNNNGTC 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 245
XspI CTAG 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.