RchiOBHm_Chr5g0027641

Haloacid dehalogenase-like hydrolase domain-containing protein At3g48420

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
21545197 .. 21547694
2498 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 171 bp
ATGACCCTCATTGAGAAAAAGTTGCTGCCTCTTCGTCCAGGCGTTGCAAAGTTGATAGATCAGGCTTTAGCAGCAGGAGTTAAAGTTGCTGTGTGCAGTACTTCCAATGAGAAGGCGGTATGCTTAATCAGGTTCCACTACTTAATGTTTTGCATAATTGGGTTTCTGTGA

Protein Analysis

56

Amino Acids

6.15

Weight (kDa)

9.3

Isoelectric Point (pI)

33.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 116
AfaI GTAC 1 cut(s) 100
AjnI CCWGG 1 cut(s) 37
ApeKI GCWGC 2 cut(s) 25, 71
BbvI GCAGC 2 cut(s) 12, 83
BciT130I CCWGG 1 cut(s) 39
BisI GCNGC 2 cut(s) 26, 72
BlsI GCNGC 2 cut(s) 27, 73
BmcAI AGTACT 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 39
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
BseBI CCWGG 1 cut(s) 39
BseXI GCAGC 2 cut(s) 12, 83
BsgI GTGCAG 1 cut(s) 115
Bsp143I GATC 1 cut(s) 58
BspACI CCGC 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 134
BssMI GATC 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 39
Bst6I CTCTTC 1 cut(s) 36
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BstV1I GCAGC 2 cut(s) 12, 83
Csp6I GTAC 1 cut(s) 99
CviJI RGCY 1 cut(s) 65
CviKI_1 RGCY 1 cut(s) 65
CviQI GTAC 1 cut(s) 99
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 37
FaiI YATR 2 cut(s) 121, 155
Fnu4HI GCNGC 2 cut(s) 26, 72
Fsp4HI GCNGC 2 cut(s) 26, 72
GluI GCNGC 2 cut(s) 26, 72
HpyAV CCTTC 1 cut(s) 106
HpyCH4V TGCA 3 cut(s) 47, 96, 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
Kzo9I GATC 1 cut(s) 58
LpnPI CCDG 5 cut(s) 24, 47, 51, 60, 115
Lsp1109I GCAGC 2 cut(s) 12, 83
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 1 cut(s) 23
MluCI AATT 1 cut(s) 156
MnlI CCTC 2 cut(s) 17, 39
MseI TTAA 3 cut(s) 81, 125, 143
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 1 cut(s) 58
NlaIV GGNNCC 1 cut(s) 134
PkrI GCNGC 2 cut(s) 27, 73
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 134
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SaqAI TTAA 3 cut(s) 81, 125, 143
SatI GCNGC 2 cut(s) 26, 72
Sau3AI GATC 1 cut(s) 58
ScaI AGTACT 1 cut(s) 100
ScrFI CCNGG 1 cut(s) 39
SetI ASST 1 cut(s) 134
SgeI CNNG 5 cut(s) 50, 51, 74, 87, 142
Sse9I AATT 1 cut(s) 156
SsiI CCGC 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 37
TasI AATT 1 cut(s) 156
TatI WGTACW 1 cut(s) 98
Tru1I TTAA 3 cut(s) 81, 125, 143
Tru9I TTAA 3 cut(s) 81, 125, 143
TseI GCWGC 2 cut(s) 25, 71
ZrmI AGTACT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.