RchiOBHm_Chr5g0029071

RbcX protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
22790785 .. 22793904
3120 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGGTCACACGGCTTCATCTCTATGGTAAATGGGTCAAGAAATGTAATCACGTTGAAGCAAGAGCATTTGTTTTGGGGCCTCAAATTTTTTTTCGCCTTGAGCCTCTGAACTCACCGGGCCGACCCGAACGAGATCACAAAATTAATATATCTCAAAAAATTCGCTCCAGCCTTTTCGAAGCTGATTATACCAAAATCATAGGGTTCTTGGTAGCAGGGAGGCAGCGTACTCAGGTCCGTCTGCTTATGGGCATGTCCGGTGTTTCTTTAGTGAGGCGTACGGGTAATAGCAATCTCCGCATCGTGCTCGGATAG

Protein Analysis

104

Amino Acids

11.89

Weight (kDa)

11.38

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 298
AcsI RAATTY 2 cut(s) 84, 159
AfaI GTAC 2 cut(s) 229, 280
AgsI TTSAA 1 cut(s) 56
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw21I GWGCWC 1 cut(s) 309
AoxI GGCC 2 cut(s) 77, 118
ApeKI GCWGC 1 cut(s) 223
ApoI RAATTY 2 cut(s) 84, 159
AseI ATTAAT 1 cut(s) 144
AspS9I GGNCC 3 cut(s) 77, 118, 235
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 105
AsuII TTCGAA 1 cut(s) 177
AvaII GGWCC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 235
BceAI ACGGC 1 cut(s) 26
BcgI CGANNNNNNTGC 1 cut(s) 289
BcnI CCSGG 1 cut(s) 117
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 3 cut(s) 77, 118, 235
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 309
BpmI CTGGAG 1 cut(s) 151
Bpu14I TTCGAA 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 117
BsaWI WCCGGW 1 cut(s) 257
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
BseMII CTCAG 1 cut(s) 245
BseXI GCAGC 1 cut(s) 235
BshFI GGCC 2 cut(s) 79, 120
BsiHKAI GWGCWC 1 cut(s) 309
BsiSI CCGG 2 cut(s) 116, 258
BsiWI CGTACG 1 cut(s) 278
BsnI GGCC 2 cut(s) 79, 120
Bsp119I TTCGAA 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 1 cut(s) 298
BspANI GGCC 2 cut(s) 79, 120
BspCNI CTCAG 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 78
BspT104I TTCGAA 1 cut(s) 177
BssMI GATC 1 cut(s) 133
BstBI TTCGAA 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 231
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 297
BstNSI RCATGY 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 235
BsuRI GGCC 2 cut(s) 79, 120
Cfr13I GGNCC 3 cut(s) 77, 118, 235
Csp6I GTAC 2 cut(s) 228, 279
CviAII CATG 1 cut(s) 253
CviJI RGCY 6 cut(s) 13, 79, 103, 120, 171, 182
CviKI_1 RGCY 6 cut(s) 13, 79, 103, 120, 171, 182
CviQI GTAC 2 cut(s) 228, 279
DdeI CTNAG 1 cut(s) 231
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 235
EcoO109I RGGNCCY 1 cut(s) 77
FaeI CATG 1 cut(s) 256
FaiI YATR 6 cut(s) 24, 149, 189, 200, 248, 254
FatI CATG 1 cut(s) 252
Fnu4HI GCNGC 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 224
GluI GCNGC 1 cut(s) 224
GsuI CTGGAG 1 cut(s) 151
HaeIII GGCC 2 cut(s) 79, 120
HapII CCGG 2 cut(s) 116, 258
Hin1II CATG 1 cut(s) 256
HpaII CCGG 2 cut(s) 116, 258
HphI GGTGA 1 cut(s) 105
Hpy188I TCNGA 2 cut(s) 108, 311
Hpy188III TCNNGA 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 1 cut(s) 297
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 1 cut(s) 256
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 5 cut(s) 129, 181, 201, 218, 271
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 1 cut(s) 309
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 4
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 3 cut(s) 84, 141, 159
MnlI CCTC 4 cut(s) 90, 114, 213, 267
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 1 cut(s) 21
MspI CCGG 2 cut(s) 116, 258
MspR9I CCNGG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 297
NciI CCSGG 1 cut(s) 117
NdeII GATC 1 cut(s) 133
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 4
NspI RCATGY 1 cut(s) 256
NspV TTCGAA 1 cut(s) 177
Pfl23II CGTACG 1 cut(s) 278
PkrI GCNGC 1 cut(s) 225
PshBI ATTAAT 1 cut(s) 144
PspLI CGTACG 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 3 cut(s) 77, 118, 235
RsaI GTAC 2 cut(s) 229, 280
RsaNI GTAC 2 cut(s) 228, 279
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 3 cut(s) 77, 118, 235
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 309
SetI ASST 3 cut(s) 54, 184, 237
SfaNI GCATC 1 cut(s) 309
SfuI TTCGAA 1 cut(s) 177
SinI GGWCC 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 3 cut(s) 84, 141, 159
SsiI CCGC 1 cut(s) 298
StyD4I CCNGG 1 cut(s) 115
TaiI ACGT 1 cut(s) 54
TaqI TCGA 1 cut(s) 177
TasI AATT 3 cut(s) 84, 141, 159
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 5
TspGWI ACGGA 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 235
VspI ATTAAT 1 cut(s) 144
XapI RAATTY 2 cut(s) 84, 159
XceI RCATGY 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.