RchiOBHm_Chr5g0030321

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
24026030 .. 24026383
354 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 354 bp
ATGGTGTCATGGACAGCCATGACTATGGGATGTGCATTGCAGGGTCATGCATATGATGCCATTTCCTTATTTGAGCAGACGAAGGGAGAGGCAATAAAGCCTACTTATGTTGCTTTCATGGCTGCATTGACTGCGTGTAGCCATGCTGGATTGGTAGACGAAGCTTGGAAGTATTATAATAGTATGACCAAAAAATATAGGATTGCTCTAGGTATAGAGCACTATGCCTATGATGCCATTTCCTTATTTGAGCAAACGAAGGGAGATAAAGAGATTTGTGATTATGAATATTTCTGTATATCTCAAGAACGAGGTTACAAGCCATATATGTACAACTACTGTCCTCACATCTAG

Protein Analysis

117

Amino Acids

13.44

Weight (kDa)

5.73

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AccI GTMKAC 1 cut(s) 156
AfaI GTAC 1 cut(s) 332
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw21I GWGCWC 1 cut(s) 222
ApeKI GCWGC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 109
BfaI CTAG 2 cut(s) 209, 352
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
BmsI GCATC 2 cut(s) 46, 223
BpuEI CTTGAG 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 35
BseGI GGATG 1 cut(s) 35
BseMI GCAATG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 222
Bsp1407I TGTACA 1 cut(s) 330
BsrDI GCAATG 1 cut(s) 35
BsrGI TGTACA 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 341
BstAPI GCANNNNNTGC 2 cut(s) 56, 131
BstAUI TGTACA 1 cut(s) 330
BstF5I GGATG 1 cut(s) 35
BstMWI GCNNNNNNNGC 4 cut(s) 56, 119, 131, 233
BstV1I GCAGC 1 cut(s) 109
BstXI CCANNNNNNTGG 1 cut(s) 25
BtsCI GGATG 1 cut(s) 35
Csp6I GTAC 1 cut(s) 331
CviAII CATG 5 cut(s) 9, 19, 47, 118, 143
CviJI RGCY 6 cut(s) 17, 100, 122, 141, 164, 322
CviKI_1 RGCY 6 cut(s) 17, 100, 122, 141, 164, 322
CviQI GTAC 1 cut(s) 331
EcoT22I ATGCAT 1 cut(s) 52
FaeI CATG 5 cut(s) 12, 22, 50, 121, 146
FatI CATG 5 cut(s) 8, 18, 46, 117, 142
FauNDI CATATG 1 cut(s) 52
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 2 cut(s) 209, 352
GluI GCNGC 1 cut(s) 123
Hin1II CATG 5 cut(s) 12, 22, 50, 121, 146
HindIII AAGCTT 1 cut(s) 162
Hpy166II GTNNAC 1 cut(s) 157
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 2 cut(s) 76, 253
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4V TGCA 4 cut(s) 35, 40, 50, 125
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 119, 131, 233
Hsp92II CATG 5 cut(s) 12, 22, 50, 121, 146
LpnPI CCDG 2 cut(s) 26, 132
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 2 cut(s) 46, 223
MaeI CTAG 2 cut(s) 209, 352
MaeIII GTNAC 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 222
MnlI CCTC 3 cut(s) 82, 305, 354
Mph1103I ATGCAT 1 cut(s) 52
MslI CAYNNNNRTG 2 cut(s) 23, 51
MwoI GCNNNNNNNGC 4 cut(s) 56, 119, 131, 233
NdeI CATATG 1 cut(s) 52
NlaIII CATG 5 cut(s) 12, 22, 50, 121, 146
NsiI ATGCAT 1 cut(s) 52
PkrI GCNGC 1 cut(s) 124
PsiI TTATAA 1 cut(s) 177
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
RseI CAYNNNNRTG 2 cut(s) 23, 51
SatI GCNGC 1 cut(s) 123
SduI GDGCHC 1 cut(s) 222
SetI ASST 3 cut(s) 166, 214, 316
SfaNI GCATC 2 cut(s) 46, 223
SmiMI CAYNNNNRTG 2 cut(s) 23, 51
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
SspI AATATT 1 cut(s) 290
SspMI CTAG 2 cut(s) 209, 352
TaaI ACNGT 1 cut(s) 341
TatI WGTACW 1 cut(s) 330
TseI GCWGC 1 cut(s) 122
TspDTI ATGAA 2 cut(s) 106, 300
XmiI GTMKAC 1 cut(s) 156
XspI CTAG 2 cut(s) 209, 352
Zsp2I ATGCAT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.