RchiOBHm_Chr5g0031041

Epidermis-specific secreted glycoprotein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
24659156 .. 24660185
1030 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
ATGCTTGGAATCTTCAATGTCCCTTTCCAACTTGGTTTCTACAACACCACCCCAAATGCCTTCACCCTCGCTCTTCATATGGGCTTGACCTGTTCGGAGTCACTCTTCCGTTGGGTTTGGATATTACCAAAATTACTTTTGGGCTCAAACACCAAGACTGCCAACAAAAGTGTGGTAGGCCTCAAGTTGCTTCCGACCGGAAACATGGTTATCTACGACTCGAAGGGAGATTTCATTTGGCAAAGCTTCGACTACCCAATGGATACTTTGTTGGTGGGTCAATCCCTGAAGGCCGGAAAGTAA

Protein Analysis

100

Amino Acids

11.13

Weight (kDa)

9.21

Isoelectric Point (pI)

35.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 42 - 97 6.8e-10 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 16
AluBI AGCT 1 cut(s) 246
AluI AGCT 1 cut(s) 246
AoxI GGCC 2 cut(s) 178, 291
AsuHPI GGTGA 1 cut(s) 55
BanII GRGCYC 1 cut(s) 146
BciVI GTATCC 1 cut(s) 256
BfuI GTATCC 1 cut(s) 256
BpuEI CTTGAG 1 cut(s) 167
BsaWI WCCGGW 1 cut(s) 197
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 2 cut(s) 180, 293
BsiEI CGRYCG 1 cut(s) 198
BsiSI CCGG 2 cut(s) 198, 294
BslFI GGGAC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 5
BsnI GGCC 2 cut(s) 180, 293
Bsp1286I GDGCHC 1 cut(s) 146
BspANI GGCC 2 cut(s) 180, 293
BspQI GCTCTTC 1 cut(s) 78
Bst6I CTCTTC 2 cut(s) 78, 110
BstMCI CGRYCG 1 cut(s) 198
BsuI GTATCC 1 cut(s) 256
BsuRI GGCC 2 cut(s) 180, 293
CviAII CATG 1 cut(s) 205
CviJI RGCY 5 cut(s) 84, 144, 180, 246, 293
CviKI_1 RGCY 5 cut(s) 84, 144, 180, 246, 293
Eam1104I CTCTTC 2 cut(s) 78, 110
EarI CTCTTC 2 cut(s) 78, 110
Eco147I AGGCCT 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 146
EcoT38I GRGCYC 1 cut(s) 146
FaeI CATG 1 cut(s) 208
FaiI YATR 3 cut(s) 78, 80, 206
FaqI GGGAC 1 cut(s) 5
FatI CATG 1 cut(s) 204
FauNDI CATATG 1 cut(s) 78
FriOI GRGCYC 1 cut(s) 146
HaeIII GGCC 2 cut(s) 180, 293
HapII CCGG 2 cut(s) 198, 294
Hin1II CATG 1 cut(s) 208
HindIII AAGCTT 1 cut(s) 244
HinfI GANTC 3 cut(s) 9, 98, 218
HpaII CCGG 2 cut(s) 198, 294
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 2 cut(s) 97, 195
HpyAV CCTTC 3 cut(s) 70, 217, 283
Hsp92II CATG 1 cut(s) 208
LguI GCTCTTC 1 cut(s) 78
LpnPI CCDG 3 cut(s) 103, 211, 299
MaeIII GTNAC 1 cut(s) 99
MboII GAAGA 3 cut(s) 4, 65, 97
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 1 cut(s) 131
MlyI GAGTC 2 cut(s) 107, 212
MmeI TCCRAC 2 cut(s) 52, 218
MnlI CCTC 2 cut(s) 77, 191
MspI CCGG 2 cut(s) 198, 294
NdeI CATATG 1 cut(s) 78
NlaIII CATG 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 99
PceI AGGCCT 1 cut(s) 180
PciSI GCTCTTC 1 cut(s) 78
PfeI GAWTC 1 cut(s) 9
PleI GAGTC 2 cut(s) 106, 212
PpsI GAGTC 2 cut(s) 106, 212
SapI GCTCTTC 1 cut(s) 78
SchI GAGTC 2 cut(s) 107, 212
SduI GDGCHC 1 cut(s) 146
SetI ASST 2 cut(s) 92, 248
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 1 cut(s) 131
SseBI AGGCCT 1 cut(s) 180
StuI AGGCCT 1 cut(s) 180
TaqI TCGA 2 cut(s) 221, 249
TasI AATT 1 cut(s) 131
TfiI GAWTC 1 cut(s) 9
TseFI GTSAC 1 cut(s) 99
Tsp45I GTSAC 1 cut(s) 99
TspDTI ATGAA 2 cut(s) 65, 223
TspGWI ACGGA 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.