Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

24690192 .. 24693590

Gene Structure 3399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGTTGCATATGGCTTCTTGTTTTGTAGTAAGGTTACTTTGATGATCAGTATACTAGGACTCAACCGGACCATGCGTGCAGTACTTATTGACTGGCTTGTGGAGGTTTCTGTTCCATTAGAAGCTCTTCAACCTCTTTGGACCTCCATGAACCGTAAATCTTGGGGTAGAAAGTTACATTCCTCGTCATCAGCTGAAGACCTTCTCCAGTGGGCAGTAAAGGCGCGCAAATCATATAGCCAAAATGATATTGACGAGGTGTGCATTGAAGTGGCTGATTATATACAGAGTTTGGTTGGATGCGGCAGCTTTGGCCTTTGTAAAGACAACCAATGCGTTGCTTGCCCGTCATCTAATGGACTGCTGGGTTGGAGTGAGACTTGTGCGCCGGAAAAGCTTACTTCTTGTAAGGCAAACAGTTTCCAATTCCATTACTACAAGGTTGAAGGGGCAGATCATTTCTTGAGTAAGTACACCAGAGGATCTGCTGCGAAGGAGGTTGATATTGTGGTCAGAAGTGTAGTTCAGACTGCAAGTGTTTGGGATACTTCTGCTGTTGGATTGCTTATGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

191

Amino Acids

21.09

Weight (kDa)

6.8

Isoelectric Point (pI)

32.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	52
AccII	CGCG	1 cut(s)	226
AciI	CCGC	1 cut(s)	303
AclWI	GGATC	1 cut(s)	490
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	2 cut(s)	84, 473
AgsI	TTSAA	3 cut(s)	131, 269, 446
AluBI	AGCT	4 cut(s)	125, 194, 309, 397
AluI	AGCT	4 cut(s)	125, 194, 309, 397
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	1 cut(s)	490
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	306, 488
Asp700I	GAANNNNTTC	2 cut(s)	126, 201
AspLEI	GCGC	3 cut(s)	226, 228, 388
AspS9I	GGNCC	2 cut(s)	69, 141
AvaII	GGWCC	2 cut(s)	69, 141
BbsI	GAAGAC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	318, 475
BciVI	GTATCC	1 cut(s)	538
BclI	TGATCA	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	1 cut(s)	56
BfuI	GTATCC	1 cut(s)	538
BisI	GCNGC	3 cut(s)	304, 307, 489
BlsI	GCNGC	3 cut(s)	305, 308, 490
BmcAI	AGTACT	1 cut(s)	84
Bme18I	GGWCC	2 cut(s)	69, 141
BmgT120I	GGNCC	2 cut(s)	69, 141
BmsI	GCATC	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	204
BpmI	CTGGAG	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	484
BsaWI	WCCGGW	1 cut(s)	66
Bse1I	ACTGG	2 cut(s)	98, 208
BseGI	GGATG	1 cut(s)	305
BseNI	ACTGG	2 cut(s)	98, 208
BsePI	GCGCGC	1 cut(s)	224
BseXI	GCAGC	2 cut(s)	318, 475
BseYI	CCCAGC	1 cut(s)	364
BsgI	GTGCAG	1 cut(s)	99
Bsh1236I	CGCG	1 cut(s)	226
BshFI	GGCC	1 cut(s)	315
BsiSI	CCGG	2 cut(s)	67, 389
BsmAI	GTCTC	1 cut(s)	371
BsnI	GGCC	1 cut(s)	315
Bsp143I	GATC	3 cut(s)	45, 454, 482
BspACI	CCGC	1 cut(s)	303
BspANI	GGCC	1 cut(s)	315
BspFNI	CGCG	1 cut(s)	226
BspPI	GGATC	1 cut(s)	490
BspQI	GCTCTTC	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	98, 208
BssHII	GCGCGC	1 cut(s)	224
BssMI	GATC	3 cut(s)	45, 454, 482
BssNAI	GTATAC	1 cut(s)	53
Bst1107I	GTATAC	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	155, 419
Bst6I	CTCTTC	1 cut(s)	132
BstC8I	GCNNGC	3 cut(s)	78, 226, 343
BstF5I	GGATG	1 cut(s)	305
BstFNI	CGCG	1 cut(s)	226
BstHHI	GCGC	3 cut(s)	226, 228, 388
BstKTI	GATC	3 cut(s)	48, 457, 485
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	3 cut(s)	45, 454, 482
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 312, 342, 394
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	318, 475
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	482
BstYI	RGATCY	1 cut(s)	482
BstZ17I	GTATAC	1 cut(s)	53
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	305
BtsIMutI	CAGTG	1 cut(s)	215
Cac8I	GCNNGC	3 cut(s)	78, 226, 343
CfoI	GCGC	3 cut(s)	226, 228, 388
Cfr13I	GGNCC	2 cut(s)	69, 141
Csp6I	GTAC	2 cut(s)	83, 472
CviAII	CATG	2 cut(s)	73, 148
CviJI	RGCY	9 cut(s)	15, 97, 125, 194, 240, 275, 309, 315, 397
CviKI_1	RGCY	9 cut(s)	15, 97, 125, 194, 240, 275, 309, 315, 397
CviQI	GTAC	2 cut(s)	83, 472
DpnI	GATC	3 cut(s)	47, 456, 484
DpnII	GATC	3 cut(s)	45, 454, 482
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco47I	GGWCC	2 cut(s)	69, 141
Eco57I	CTGAAG	1 cut(s)	216
FaeI	CATG	2 cut(s)	76, 151
FatI	CATG	2 cut(s)	72, 147
FauNDI	CATATG	1 cut(s)	10
FbaI	TGATCA	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	3 cut(s)	304, 307, 489
FokI	GGATG	1 cut(s)	312
Fsp4HI	GCNGC	3 cut(s)	304, 307, 489
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	3 cut(s)	225, 227, 387
GluI	GCNGC	3 cut(s)	304, 307, 489
GsaI	CCCAGC	1 cut(s)	368
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	315
HapII	CCGG	2 cut(s)	67, 389
HhaI	GCGC	3 cut(s)	226, 228, 388
Hin1II	CATG	2 cut(s)	76, 151
Hin6I	GCGC	3 cut(s)	224, 226, 386
HinP1I	GCGC	3 cut(s)	224, 226, 386
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	1 cut(s)	60
HpaII	CCGG	2 cut(s)	67, 389
Hpy166II	GTNNAC	2 cut(s)	53, 474
Hpy188I	TCNGA	2 cut(s)	515, 528
Hpy188III	TCNNGA	1 cut(s)	463
Hpy8I	GTNNAC	2 cut(s)	53, 474
HpyAV	CCTTC	3 cut(s)	212, 440, 487
HpyCH4III	ACNGT	2 cut(s)	155, 419
HpyCH4V	TGCA	4 cut(s)	8, 80, 264, 533
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 312, 342, 394
Hsp92II	CATG	2 cut(s)	76, 151
HspAI	GCGC	3 cut(s)	224, 226, 386
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	45, 454, 482
LguI	GCTCTTC	1 cut(s)	132
LpnPI	CCDG	6 cut(s)	79, 80, 221, 350, 402, 490
Lsp1109I	GCAGC	2 cut(s)	318, 475
LweI	GCATC	1 cut(s)	290
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	2 cut(s)	34, 174
MalI	GATC	3 cut(s)	47, 456, 484
MboI	GATC	3 cut(s)	45, 454, 482
MboII	GAAGA	2 cut(s)	119, 209
MflI	RGATCY	1 cut(s)	482
MluCI	AATT	1 cut(s)	425
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	3 cut(s)	277, 350, 538
MnlI	CCTC	7 cut(s)	97, 144, 154, 193, 250, 473, 490
MroXI	GAANNNNTTC	2 cut(s)	126, 201
MslI	CAYNNNNRTG	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	2 cut(s)	67, 389
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	4 cut(s)	221, 312, 342, 394
NdeI	CATATG	1 cut(s)	10
NdeII	GATC	3 cut(s)	45, 454, 482
NlaIII	CATG	2 cut(s)	76, 151
PauI	GCGCGC	1 cut(s)	224
PciSI	GCTCTTC	1 cut(s)	132
PdmI	GAANNNNTTC	2 cut(s)	126, 201
PkrI	GCNGC	3 cut(s)	305, 308, 490
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
PspFI	CCCAGC	1 cut(s)	364
PspPI	GGNCC	2 cut(s)	69, 141
PsuI	RGATCY	1 cut(s)	482
PteI	GCGCGC	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	2 cut(s)	84, 473
RsaNI	GTAC	2 cut(s)	83, 472
RseI	CAYNNNNRTG	1 cut(s)	269
SapI	GCTCTTC	1 cut(s)	132
SatI	GCNGC	3 cut(s)	304, 307, 489
Sau3AI	GATC	3 cut(s)	45, 454, 482
Sau96I	GGNCC	2 cut(s)	69, 141
ScaI	AGTACT	1 cut(s)	84
SchI	GAGTC	1 cut(s)	54
SfaNI	GCATC	1 cut(s)	290
SinI	GGWCC	2 cut(s)	69, 141
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	463
SmoI	CTYRAG	1 cut(s)	463
Sse9I	AATT	1 cut(s)	425
SsiI	CCGC	1 cut(s)	303
SspMI	CTAG	1 cut(s)	56
TaaI	ACNGT	2 cut(s)	155, 419
TasI	AATT	1 cut(s)	425
TatI	WGTACW	2 cut(s)	82, 471
TauI	GCSGC	1 cut(s)	306
TscAI	CASTG	1 cut(s)	215
TseI	GCWGC	2 cut(s)	306, 488
TspDTI	ATGAA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	215
VpaK11BI	GGWCC	2 cut(s)	69, 141
XmiI	GTMKAC	1 cut(s)	52
XmnI	GAANNNNTTC	2 cut(s)	126, 201
XspI	CTAG	1 cut(s)	56
ZrmI	AGTACT	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.