Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

24821169 .. 24821646

Gene Structure 478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTGGTTAGTCACCGGTGCATTCTTCCTTTTTGTGGGAGTCATTGTTTGGATTCTAGAGCACATGATTAATCACGAGTTCCGTGGTCCACCAAGGGAACAGCTCATGACTATTTTTTGGTTAGTATGTTCTACATCATTAAGGCCTCTGATTTGTTTGAGACTTTCTGATTCATATAGTCATAAGGTGTCTTTCTGGAAAGAAAAATGCCCAAATTCCCTAATTGATGGACCTAGATGTTGCCTGGGTGTGGGGTGCCTATTAAATCACTTGGTGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009605 GO:0009611 GO:0009612 GO:0009628 GO:0009719 GO:0009987 GO:0010033 GO:0010034 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0033554 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070417 GO:0070588 GO:0070838 GO:0070887 GO:0071214 GO:0071229 GO:0071230 GO:0071236 GO:0071260 GO:0071310 GO:0071311 GO:0071417 GO:0071495 GO:0071496 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0104004 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

93

Amino Acids

10.75

Weight (kDa)

8.3

Isoelectric Point (pI)

27.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lig_chan	PF00060	1 - 45	6.9e-08	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	214
AdeI	CACNNNGTG	1 cut(s)	274
AfiI	CCNNNNNNNGG	2 cut(s)	34, 250
AgeI	ACCGGT	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	1 cut(s)	154
AoxI	GGCC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	214
AseI	ATTAAT	1 cut(s)	69
AsiGI	ACCGGT	1 cut(s)	14
AspS9I	GGNCC	2 cut(s)	86, 230
AsuHPI	GGTGA	1 cut(s)	4
AvaII	GGWCC	2 cut(s)	86, 230
BanI	GGYRCC	1 cut(s)	255
BauI	CACGAG	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	63
BccI	CCATC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	2 cut(s)	56, 234
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	2 cut(s)	86, 230
BmgT120I	GGNCC	2 cut(s)	86, 230
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	245
BsaJI	CCNNGG	3 cut(s)	82, 92, 244
BsaWI	WCCGGW	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 250
Bse118I	RCCGGY	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	3 cut(s)	82, 92, 244
BseLI	CCNNNNNNNGG	2 cut(s)	34, 250
BshFI	GGCC	1 cut(s)	145
BshNI	GGYRCC	1 cut(s)	255
BshTI	ACCGGT	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	2 cut(s)	34, 250
BsmAI	GTCTC	1 cut(s)	154
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	145
BspHI	TCATGA	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	3 cut(s)	82, 92, 244
BssSI	CACGAG	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	92
Bst2BI	CACGAG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	245
BstDSI	CCRYGG	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	154
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	145
BtgI	CCRYGG	1 cut(s)	82
CciI	TCATGA	1 cut(s)	105
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	2 cut(s)	86, 230
CspAI	ACCGGT	1 cut(s)	14
CviAII	CATG	2 cut(s)	64, 106
CviJI	RGCY	2 cut(s)	103, 145
CviKI_1	RGCY	2 cut(s)	103, 145
DraIII	CACNNNGTG	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	92
Eco147I	AGGCCT	1 cut(s)	145
Eco47I	GGWCC	2 cut(s)	86, 230
EcoRII	CCWGG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	2 cut(s)	67, 109
FaiI	YATR	6 cut(s)	65, 107, 127, 175, 177, 183
FatI	CATG	2 cut(s)	63, 105
FspBI	CTAG	2 cut(s)	56, 234
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	1 cut(s)	15
Hin1II	CATG	2 cut(s)	67, 109
HinfI	GANTC	3 cut(s)	39, 52, 170
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	2 cut(s)	150, 169
Hpy188III	TCNNGA	4 cut(s)	56, 74, 106, 196
Hpy8I	GTNNAC	1 cut(s)	89
HpyCH4V	TGCA	1 cut(s)	20
Hsp92II	CATG	2 cut(s)	67, 109
LpnPI	CCDG	4 cut(s)	28, 181, 230, 257
MaeI	CTAG	2 cut(s)	56, 234
MaeIII	GTNAC	1 cut(s)	10
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	2 cut(s)	214, 222
MlyI	GAGTC	1 cut(s)	48
MnlI	CCTC	1 cut(s)	156
MseI	TTAA	3 cut(s)	69, 140, 263
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	245
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	245
NlaIII	CATG	2 cut(s)	67, 109
NlaIV	GGNNCC	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	10
PagI	TCATGA	1 cut(s)	105
PceI	AGGCCT	1 cut(s)	145
PctI	GAATGC	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	52, 170
PinAI	ACCGGT	1 cut(s)	14
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PshBI	ATTAAT	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	2 cut(s)	86, 230
SaqAI	TTAA	3 cut(s)	69, 140, 263
Sau96I	GGNCC	2 cut(s)	86, 230
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	3 cut(s)	105, 189, 235
SgrAI	CRCCGGYG	1 cut(s)	14
SinI	GGWCC	2 cut(s)	86, 230
Sse9I	AATT	2 cut(s)	214, 222
SseBI	AGGCCT	1 cut(s)	145
SspMI	CTAG	2 cut(s)	56, 234
StuI	AGGCCT	1 cut(s)	145
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	92
TasI	AATT	2 cut(s)	214, 222
TfiI	GAWTC	2 cut(s)	52, 170
Tru1I	TTAA	3 cut(s)	69, 140, 263
Tru9I	TTAA	3 cut(s)	69, 140, 263
TseFI	GTSAC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	71
VpaK11BI	GGWCC	2 cut(s)	86, 230
VspI	ATTAAT	1 cut(s)	69
XapI	RAATTY	1 cut(s)	214
XbaI	TCTAGA	1 cut(s)	55
XspI	CTAG	2 cut(s)	56, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.