Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

25014033 .. 25014615

Gene Structure 583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGTTTAAGCTCACTGTGGATCAGTCCTATGTCTCAAAGGTTGAAGAAGCTGACCTGTGCTGCTGTAGGCTTTTTTTGTCTACTATAGATGGCGGGTGGGAGATAACGGCTTACTTTCATTCCCTTCCTCAGGCAAGTACGAGTATGGGTGAAAGAGGATCGTTGATTCCGACAGACACAAGGCAGTGCAAACAACTTCCCTTAGTGACGTCCCCTCTTAAGTCAATGAGTAGCCAACCTCTCTCTGTGCAGTTATATCTTGAACATCCAAGTTTATCTGAACCAAATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0033554 GO:0050896 GO:0051716

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05100 ko05131 ko05166 map04110 map04111 map04113 map04114 map04914 map05100 map05131 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

97

Amino Acids

10.77

Weight (kDa)

5.16

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	80
AciI	CCGC	1 cut(s)	93
AclWI	GGATC	2 cut(s)	27, 166
AcyI	GRCGYC	1 cut(s)	209
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	130
AflII	CTTAAG	1 cut(s)	218
AgsI	TTSAA	2 cut(s)	44, 263
AluBI	AGCT	2 cut(s)	10, 50
AluI	AGCT	2 cut(s)	10, 50
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	2 cut(s)	27, 166
ApeKI	GCWGC	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	161
AxyI	CCTNAGG	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	37
BfmI	CTRYAG	2 cut(s)	64, 84
BfrI	CTTAAG	1 cut(s)	218
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
BsaHI	GRCGYC	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse21I	CCTNAGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	47
BsgI	GTGCAG	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	19, 158
BspACI	CCGC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	142
BspPI	GGATC	2 cut(s)	27, 166
BspTI	CTTAAG	1 cut(s)	218
BssMI	GATC	2 cut(s)	19, 158
BssNI	GRCGYC	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	16
BstACI	GRCGYC	1 cut(s)	209
BstAFI	CTTAAG	1 cut(s)	218
BstDEI	CTNAG	2 cut(s)	129, 202
BstENI	CCTNNNNNAGG	1 cut(s)	128
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	2 cut(s)	22, 161
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	19, 158
BstSFI	CTRYAG	2 cut(s)	64, 84
BstV1I	GCAGC	1 cut(s)	47
Bsu36I	CCTNAGG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	265
BtsI	GCAGTG	1 cut(s)	191
BtsIMutI	CAGTG	2 cut(s)	12, 191
Csp6I	GTAC	1 cut(s)	138
CviJI	RGCY	5 cut(s)	10, 50, 70, 110, 234
CviKI_1	RGCY	5 cut(s)	10, 50, 70, 110, 234
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	2 cut(s)	129, 202
DpnI	GATC	2 cut(s)	21, 160
DpnII	GATC	2 cut(s)	19, 158
Eco81I	CCTNAGG	1 cut(s)	129
EcoNI	CCTNNNNNAGG	1 cut(s)	128
FaiI	YATR	4 cut(s)	30, 86, 146, 256
FaqI	GGGAC	1 cut(s)	196
FauI	CCCGC	1 cut(s)	86
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	1 cut(s)	61
FokI	GGATG	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	61
GluI	GCNGC	1 cut(s)	61
Hin1I	GRCGYC	1 cut(s)	209
HinfI	GANTC	1 cut(s)	166
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	2 cut(s)	171, 280
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	1 cut(s)	81
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	2 cut(s)	189, 250
HpyF3I	CTNAG	2 cut(s)	129, 202
HpySE526I	ACGT	1 cut(s)	209
Hsp92I	GRCGYC	1 cut(s)	209
Kzo9I	GATC	2 cut(s)	19, 158
LpnPI	CCDG	2 cut(s)	68, 116
Lsp1109I	GCAGC	1 cut(s)	47
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	2 cut(s)	21, 160
MboI	GATC	2 cut(s)	19, 158
MboII	GAAGA	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	4 cut(s)	138, 149, 225, 249
MseI	TTAA	2 cut(s)	6, 219
MspCI	CTTAAG	1 cut(s)	218
NdeII	GATC	2 cut(s)	19, 158
NmuCI	GTSAC	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	166
PkrI	GCNGC	1 cut(s)	62
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SaqAI	TTAA	2 cut(s)	6, 219
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	2 cut(s)	19, 158
SetI	ASST	6 cut(s)	12, 42, 52, 57, 212, 241
SfcI	CTRYAG	2 cut(s)	64, 84
SgeI	CNNG	8 cut(s)	67, 106, 143, 147, 153, 192, 272, 282
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
SsiI	CCGC	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	2 cut(s)	6, 219
Tru9I	TTAA	2 cut(s)	6, 219
TscAI	CASTG	2 cut(s)	19, 191
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	60
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	107
TspRI	CASTG	2 cut(s)	19, 191
Vha464I	CTTAAG	1 cut(s)	218
XagI	CCTNNNNNAGG	1 cut(s)	128
XmiI	GTMKAC	1 cut(s)	80
ZraI	GACGTC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.