RchiOBHm_Chr5g0031991

Zinc-binding dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
25702774 .. 25704469
1696 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 129 bp
ATGAACTTGCACCAAAACCAGCGTCAATCACACGTGGAAGCAATTGCCATTCCTTTTGCTGCATTGACTGCTTGGCGTGCTCTAAAAGGTACTGCAAGGATATCTGAGGGGACAGAGGGGAGGAACTAG

Protein Analysis

42

Amino Acids

4.65

Weight (kDa)

10.67

Isoelectric Point (pI)

30.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 34
AfaI GTAC 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 31
Alw21I GWGCWC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 59
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
BbrPI CACGTG 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 1 cut(s) 46
BfaI CTAG 1 cut(s) 127
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BsaAI YACGTR 1 cut(s) 34
BseMII CTCAG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 82
BslFI GGGAC 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 82
BspCNI CTCAG 1 cut(s) 97
BstAPI GCANNNNNTGC 1 cut(s) 68
BstBAI YACGTR 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 105
BstMWI GCNNNNNNNGC 2 cut(s) 68, 77
BstV1I GCAGC 1 cut(s) 46
Cac8I GCNNGC 1 cut(s) 78
CseI GACGC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 90
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 105
Eco32I GATATC 1 cut(s) 102
Eco72I CACGTG 1 cut(s) 34
EcoRV GATATC 1 cut(s) 102
FaqI GGGAC 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 127
GluI GCNGC 1 cut(s) 60
HgaI GACGC 1 cut(s) 11
Hpy188I TCNGA 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 3 cut(s) 10, 62, 95
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 77
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 1 cut(s) 33
LpnPI CCDG 1 cut(s) 32
Lsp1109I GCAGC 1 cut(s) 46
MaeI CTAG 1 cut(s) 127
MaeII ACGT 1 cut(s) 33
MfeI CAATTG 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 1 cut(s) 42
MnlI CCTC 3 cut(s) 100, 109, 114
MunI CAATTG 1 cut(s) 42
MwoI GCNNNNNNNGC 2 cut(s) 68, 77
PkrI GCNGC 1 cut(s) 61
PmaCI CACGTG 1 cut(s) 34
PmlI CACGTG 1 cut(s) 34
Ppu21I YACGTR 1 cut(s) 34
PspCI CACGTG 1 cut(s) 34
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SatI GCNGC 1 cut(s) 60
SduI GDGCHC 1 cut(s) 82
SetI ASST 2 cut(s) 36, 91
SgeI CNNG 7 cut(s) 19, 31, 44, 46, 84, 89, 108
Sse9I AATT 1 cut(s) 42
SspMI CTAG 1 cut(s) 127
TaiI ACGT 1 cut(s) 36
TasI AATT 1 cut(s) 42
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 17
XspI CTAG 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.