RchiOBHm_Chr5g0033471

Proton pump-interactor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
27335866 .. 27337259
1394 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 501 bp
ATGATGTTAAAGCACTTGAAGAGCTTACTCATGCAGATGTTTGTTAAACAACTCCTTATATATCGTCACTCATTGTTAAATGTAGTTGCGGTATTTAAAAGATTTGATATATTTGACAGGTGGAGAAATTTGTCCCAGTGGAATAGTAAAAAGGATTTTAGGGATGAATATGAGAAAAGAATTTTGTTGTCTCTGGATGGTCGGCAATTGAGTAGGGATGGACGAATAAGAAACCCAGATGAAAAGCCATTGGTGGTTCATGAAGTGTCCACACCCATAGTAGTAGAGTCGGCAACAAAAGCTAATACAAAACAAGTCAAGGAAGATGGCAGATCTGCTCCATTAGATAGTTTGCCTGTGCAGAAGGTTCAGAAAGAAGCCAAAAGTAAAGCAGTGCCTCCAAAATCTACTGTAGACGAAGACAAGGAGATATATGGGCTTGAGAAGCCGAAACAGGACAGTAAAGTTGAAGAAGATGAAAAGAGAAGAGGAAATTTCTAA

Protein Analysis

166

Amino Acids

19.42

Weight (kDa)

9.61

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 414
AciI CCGC 1 cut(s) 89
AcsI RAATTY 3 cut(s) 127, 180, 493
AgsI TTSAA 2 cut(s) 19, 470
AluBI AGCT 2 cut(s) 24, 302
AluI AGCT 2 cut(s) 24, 302
Alw26I GTCTC 1 cut(s) 195
ApoI RAATTY 3 cut(s) 127, 180, 493
BbsI GAAGAC 1 cut(s) 426
BccI CCATC 3 cut(s) 191, 212, 320
BcoDI GTCTC 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 411
BglII AGATCT 1 cut(s) 332
BmrI ACTGGG 1 cut(s) 130
BmuI ACTGGG 1 cut(s) 130
BpiI GAAGAC 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 461
Bse1I ACTGG 1 cut(s) 136
BseGI GGATG 3 cut(s) 169, 202, 223
BseNI ACTGG 1 cut(s) 136
BsgI GTGCAG 1 cut(s) 380
BslFI GGGAC 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 195
BsmFI GGGAC 1 cut(s) 118
Bsp143I GATC 1 cut(s) 332
BspACI CCGC 1 cut(s) 89
BspHI TCATGA 1 cut(s) 259
BspQI GCTCTTC 1 cut(s) 14
BsrI ACTGG 1 cut(s) 136
BssMI GATC 1 cut(s) 332
Bst4CI ACNGT 2 cut(s) 412, 461
Bst6I CTCTTC 2 cut(s) 14, 481
BstF5I GGATG 3 cut(s) 169, 202, 223
BstKTI GATC 1 cut(s) 335
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 1 cut(s) 332
BstMWI GCNNNNNNNGC 2 cut(s) 299, 445
BstSFI CTRYAG 1 cut(s) 411
BstV2I GAAGAC 1 cut(s) 426
BstX2I RGATCY 1 cut(s) 332
BstYI RGATCY 1 cut(s) 332
BtsCI GGATG 3 cut(s) 169, 202, 223
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 2 cut(s) 143, 399
CciI TCATGA 1 cut(s) 259
CviAII CATG 2 cut(s) 31, 260
CviJI RGCY 6 cut(s) 24, 247, 302, 380, 439, 448
CviKI_1 RGCY 6 cut(s) 24, 247, 302, 380, 439, 448
DpnI GATC 1 cut(s) 334
DpnII GATC 1 cut(s) 332
DraI TTTAAA 1 cut(s) 97
Eam1104I CTCTTC 2 cut(s) 14, 481
EarI CTCTTC 2 cut(s) 14, 481
FaeI CATG 2 cut(s) 34, 263
FaiI YATR 9 cut(s) 32, 59, 61, 110, 171, 261, 278, 433, 435
FaqI GGGAC 1 cut(s) 118
FatI CATG 2 cut(s) 30, 259
FblI GTMKAC 1 cut(s) 414
FokI GGATG 3 cut(s) 176, 209, 230
Hin1II CATG 2 cut(s) 34, 263
HinfI GANTC 1 cut(s) 287
Hpy166II GTNNAC 2 cut(s) 270, 415
Hpy188I TCNGA 1 cut(s) 372
Hpy188III TCNNGA 2 cut(s) 194, 260
Hpy8I GTNNAC 2 cut(s) 270, 415
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 2 cut(s) 412, 461
HpyCH4V TGCA 2 cut(s) 34, 361
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 445
Hsp92II CATG 2 cut(s) 34, 263
Kzo9I GATC 1 cut(s) 332
LguI GCTCTTC 1 cut(s) 14
LmnI GCTCC 1 cut(s) 343
LpnPI CCDG 6 cut(s) 103, 149, 179, 249, 369, 440
MaeIII GTNAC 1 cut(s) 65
MalI GATC 1 cut(s) 334
MboI GATC 1 cut(s) 332
MboII GAAGA 6 cut(s) 31, 335, 431, 482, 485, 498
MfeI CAATTG 1 cut(s) 206
MflI RGATCY 1 cut(s) 332
MluCI AATT 4 cut(s) 127, 180, 206, 493
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 2 cut(s) 408, 482
MseI TTAA 4 cut(s) 8, 45, 77, 96
MslI CAYNNNNRTG 1 cut(s) 35
MunI CAATTG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 299, 445
NdeII GATC 1 cut(s) 332
NlaIII CATG 2 cut(s) 34, 263
NmuCI GTSAC 1 cut(s) 65
PagI TCATGA 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 14
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PsuI RGATCY 1 cut(s) 332
RseI CAYNNNNRTG 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 14
SaqAI TTAA 4 cut(s) 8, 45, 77, 96
Sau3AI GATC 1 cut(s) 332
SchI GAGTC 1 cut(s) 296
SetI ASST 4 cut(s) 26, 122, 304, 369
SfcI CTRYAG 1 cut(s) 411
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 4 cut(s) 127, 180, 206, 493
SsiI CCGC 1 cut(s) 89
TaaI ACNGT 2 cut(s) 412, 461
TasI AATT 4 cut(s) 127, 180, 206, 493
Tru1I TTAA 4 cut(s) 8, 45, 77, 96
Tru9I TTAA 4 cut(s) 8, 45, 77, 96
TscAI CASTG 2 cut(s) 143, 399
TseFI GTSAC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 5 cut(s) 180, 248, 255, 276, 492
TspRI CASTG 2 cut(s) 143, 399
XapI RAATTY 3 cut(s) 127, 180, 493
XmiI GTMKAC 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.