RchiOBHm_Chr5g0034431

General transcription factor 3C polypeptide

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
28286640 .. 28289809
3170 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
ATGAAATTCCGGATTGAGAGTTTGAGACCAAAGACCCAGTTCAATTTACTTCACAAACTGATACAGGGTGAGGGTTTAGCTATTGGAAAATGGGATGAGGCGATTGGGACATGCCTTTTATTCAAAGAAGAAGTTGTCCCTGTTGTTCATGAAGAAAAAGGACCATCAGAAGCAAACTCTTTTGCTGGCAAATGCATAGTTGATCAAAACCAATCTTCAAGCAAGCAAAACCACTTGGCTGCACTCATAGGATTCTTAAATTCAGATTGGCACCAGATTTTGACTCTAATACTACATTTGCACCGACTCAGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

11.84

Weight (kDa)

7.86

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 270
AccIII TCCGGA 1 cut(s) 9
AcsI RAATTY 2 cut(s) 5, 259
AgsI TTSAA 3 cut(s) 43, 124, 219
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 19
Aor13HI TCCGGA 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 2 cut(s) 5, 259
AspS9I GGNCC 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 80
AvaII GGWCC 1 cut(s) 161
BanI GGYRCC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 226
BccI CCATC 1 cut(s) 172
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 19
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 272
BmrI ACTGGG 1 cut(s) 31
BmuI ACTGGG 1 cut(s) 31
BsaI GGTCTC 1 cut(s) 19
BsaWI WCCGGW 1 cut(s) 9
Bse1I ACTGG 1 cut(s) 37
BseAI TCCGGA 1 cut(s) 9
BseGI GGATG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 37
BseXI GCAGC 1 cut(s) 226
BsgI GTGCAG 1 cut(s) 225
BshNI GGYRCC 1 cut(s) 270
BsiSI CCGG 1 cut(s) 10
BslFI GGGAC 2 cut(s) 121, 122
BsmAI GTCTC 1 cut(s) 19
BsmFI GGGAC 2 cut(s) 121, 122
Bso31I GGTCTC 1 cut(s) 19
Bsp13I TCCGGA 1 cut(s) 9
Bsp143I GATC 1 cut(s) 202
BspEI TCCGGA 1 cut(s) 9
BspHI TCATGA 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 272
BspT107I GGYRCC 1 cut(s) 270
BspTNI GGTCTC 1 cut(s) 19
BsrI ACTGG 1 cut(s) 37
BssMI GATC 1 cut(s) 202
BstC8I GCNNGC 2 cut(s) 187, 224
BstDEI CTNAG 1 cut(s) 308
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 1 cut(s) 205
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 1 cut(s) 202
BstNSI RCATGY 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 100
Cac8I GCNNGC 2 cut(s) 187, 224
CciI TCATGA 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 161
CviAII CATG 2 cut(s) 111, 149
CviJI RGCY 2 cut(s) 80, 239
CviKI_1 RGCY 2 cut(s) 80, 239
DdeI CTNAG 1 cut(s) 308
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eco31I GGTCTC 1 cut(s) 19
Eco47I GGWCC 1 cut(s) 161
EcoT22I ATGCAT 1 cut(s) 197
FaeI CATG 2 cut(s) 114, 152
FaiI YATR 4 cut(s) 112, 150, 197, 248
FaqI GGGAC 2 cut(s) 121, 122
FatI CATG 2 cut(s) 110, 148
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 240
GluI GCNGC 1 cut(s) 240
HapII CCGG 1 cut(s) 10
Hin1II CATG 2 cut(s) 114, 152
HinfI GANTC 3 cut(s) 252, 283, 306
HpaII CCGG 1 cut(s) 10
HphI GGTGA 1 cut(s) 80
Hpy188I TCNGA 2 cut(s) 169, 265
Hpy188III TCNNGA 2 cut(s) 10, 149
HpyCH4V TGCA 3 cut(s) 195, 242, 301
HpyF3I CTNAG 1 cut(s) 308
Hsp92II CATG 2 cut(s) 114, 152
Kpn2I TCCGGA 1 cut(s) 9
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 6 cut(s) 23, 50, 50, 153, 171, 287
Lsp1109I GCAGC 1 cut(s) 226
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 3 cut(s) 140, 164, 207
MluCI AATT 3 cut(s) 5, 43, 259
MlyI GAGTC 2 cut(s) 277, 300
MnlI CCTC 2 cut(s) 64, 91
Mph1103I ATGCAT 1 cut(s) 197
MroI TCCGGA 1 cut(s) 9
MseI TTAA 1 cut(s) 257
MspI CCGG 1 cut(s) 10
NdeII GATC 1 cut(s) 202
NlaIII CATG 2 cut(s) 114, 152
NlaIV GGNNCC 1 cut(s) 272
NsiI ATGCAT 1 cut(s) 197
NspI RCATGY 1 cut(s) 114
PagI TCATGA 1 cut(s) 148
PfeI GAWTC 1 cut(s) 252
PkrI GCNGC 1 cut(s) 241
PleI GAGTC 2 cut(s) 277, 300
PpsI GAGTC 2 cut(s) 277, 300
PspN4I GGNNCC 1 cut(s) 272
PspPI GGNCC 1 cut(s) 161
SaqAI TTAA 1 cut(s) 257
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 1 cut(s) 202
Sau96I GGNCC 1 cut(s) 161
SchI GAGTC 2 cut(s) 277, 300
SetI ASST 1 cut(s) 82
SinI GGWCC 1 cut(s) 161
Sse9I AATT 3 cut(s) 5, 43, 259
TasI AATT 3 cut(s) 5, 43, 259
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 3 cut(s) 17, 137, 165
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 2 cut(s) 5, 259
XceI RCATGY 1 cut(s) 114
Zsp2I ATGCAT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.