Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

30820184 .. 30826217

Gene Structure 6034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTATTGCTGTTTGGTATGCATTCCTTTGTGGCAGTTGATGGAAATATCAAATATAGTAGCTTTGGGGAGGAAATACAGTGATCGCAGGGAAGGTCAAGGGAGGATGTTTATGGAGAGTTCGCAAAACGAGAATTTTGGAGAGTGGTATCGTCAAGATATCTTTGTGGGCGGCACCGATACTACTTTTACAATTTTAGAATGGGGGATGTCTGAGCTTTTCAAGCATCCAAGTCTTATGAGGAAATTGCAAAGTGAGGTAAGGGAAATAGTCGGAAACCATAAAGACATAATAACAGAGGATGATTTGGTTGGAATGAATTATTTGAAGGCAGTGATCAAGGAGACTTTTCGCTTGCATCCTCCGGTTCCATTACTATTGCCTAGAATTACTACCCAAGATGCAAAGATAAATGGTTACAATATATTGTCCGGTATACAAGTCTTTGTTAATGCATGGCAGACTGGAAGAGACCCAAAATCATACAAGGAACCAGAAGAGTTCAAACCAGAAAGATTTATAAACAATGCCATAGATTATAAAGGGAATGATGGTTTTCAATTTATTCCATTTGGGGCTGGTAGTTGTCCACGTATTCAGTTTGCCATGGTTGACCTTAGTGACTTTGTCTTCCCACTCGGCTTGCACAAAGTAACTCTGCCTTCAGGCCCCTCTTCTTGTTCGTGTCTATCTCTTAGAAGCCAACCCATTTCCTCTCTCATCTCTCCTCACCTGCAAACCAAAAAGGAAGAAACCCAAAGTTTTGATTCTAAGCAACATCACCACGAAGACTGGGAAGAGACACTCTTCATTCCTCTCTTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005911 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0055044 GO:0055114 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00980 ko01100 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00980 map01100 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

275

Amino Acids

31.6

Weight (kDa)

5.78

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	53 - 206	5.6e-50	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	521, 540
AarI	CACCTGC	1 cut(s)	741
Acc36I	ACCTGC	1 cut(s)	741
AccB1I	GGYRCC	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	436
AciI	CCGC	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	133
AcuI	CTGAAG	1 cut(s)	648
AgsI	TTSAA	5 cut(s)	223, 328, 505, 560, 823
AluBI	AGCT	2 cut(s)	62, 217
AluI	AGCT	2 cut(s)	62, 217
Alw26I	GTCTC	3 cut(s)	338, 465, 794
AoxI	GGCC	1 cut(s)	667
ApoI	RAATTY	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	668
AsuHPI	GGTGA	2 cut(s)	722, 773
BanI	GGYRCC	1 cut(s)	173
BbsI	GAAGAC	2 cut(s)	622, 795
BccI	CCATC	2 cut(s)	34, 545
BclI	TGATCA	1 cut(s)	336
BcoDI	GTCTC	3 cut(s)	338, 465, 794
BfaI	CTAG	1 cut(s)	384
BfuAI	ACCTGC	1 cut(s)	741
BisI	GCNGC	1 cut(s)	172
BlsI	GCNGC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	668
BmiI	GGNNCC	4 cut(s)	175, 369, 492, 670
BmrI	ACTGGG	1 cut(s)	802
BmsI	GCATC	3 cut(s)	235, 367, 391
BmuI	ACTGGG	1 cut(s)	802
BpiI	GAAGAC	2 cut(s)	622, 795
BsaAI	YACGTR	1 cut(s)	593
BsaI	GGTCTC	1 cut(s)	465
BsaJI	CCNNGG	1 cut(s)	606
BsaWI	WCCGGW	2 cut(s)	364, 431
Bse1I	ACTGG	2 cut(s)	469, 797
BseDI	CCNNGG	1 cut(s)	606
BseGI	GGATG	5 cut(s)	111, 213, 226, 307, 358
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	2 cut(s)	469, 797
BseRI	GAGGAG	1 cut(s)	717
BshFI	GGCC	1 cut(s)	669
BshNI	GGYRCC	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	365, 432
BsmAI	GTCTC	3 cut(s)	338, 465, 794
BsmI	GAATGC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	669
Bso31I	GGTCTC	1 cut(s)	465
Bsp143I	GATC	2 cut(s)	82, 336
Bsp19I	CCATGG	1 cut(s)	606
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	1 cut(s)	669
BspCNI	CTCAG	1 cut(s)	205
BspLI	GGNNCC	4 cut(s)	175, 369, 492, 670
BspMI	ACCTGC	1 cut(s)	741
BspT107I	GGYRCC	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	469, 797
BssECI	CCNNGG	1 cut(s)	606
BssMI	GATC	2 cut(s)	82, 336
BssNAI	GTATAC	1 cut(s)	437
BssT1I	CCWWGG	1 cut(s)	606
Bst1107I	GTATAC	1 cut(s)	437
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	6 cut(s)	463, 492, 679, 792, 812, 824
BstBAI	YACGTR	1 cut(s)	593
BstC8I	GCNNGC	2 cut(s)	356, 644
BstDEI	CTNAG	4 cut(s)	213, 617, 695, 771
BstDSI	CCRYGG	1 cut(s)	606
BstF5I	GGATG	5 cut(s)	111, 213, 226, 307, 358
BstKTI	GATC	2 cut(s)	85, 339
BstMAI	GTCTC	3 cut(s)	338, 465, 794
BstMBI	GATC	2 cut(s)	82, 336
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstV2I	GAAGAC	2 cut(s)	622, 795
BstZ17I	GTATAC	1 cut(s)	437
BsuRI	GGCC	1 cut(s)	669
BtgI	CCRYGG	1 cut(s)	606
BtsCI	GGATG	5 cut(s)	111, 213, 226, 307, 358
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	2 cut(s)	85, 339
BveI	ACCTGC	1 cut(s)	741
Cac8I	GCNNGC	2 cut(s)	356, 644
Cfr13I	GGNCC	1 cut(s)	668
CspCI	CAANNNNNGTGG	2 cut(s)	624, 659
CviAII	CATG	2 cut(s)	456, 607
CviJI	RGCY	6 cut(s)	62, 217, 578, 642, 669, 702
CviKI_1	RGCY	6 cut(s)	62, 217, 578, 642, 669, 702
DdeI	CTNAG	4 cut(s)	213, 617, 695, 771
DpnI	GATC	2 cut(s)	84, 338
DpnII	GATC	2 cut(s)	82, 336
Eam1104I	CTCTTC	6 cut(s)	463, 492, 679, 792, 812, 824
EarI	CTCTTC	6 cut(s)	463, 492, 679, 792, 812, 824
Eco130I	CCWWGG	1 cut(s)	606
Eco31I	GGTCTC	1 cut(s)	465
Eco32I	GATATC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	648
EcoO109I	RGGNCCY	1 cut(s)	668
EcoRV	GATATC	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	606
EcoT22I	ATGCAT	2 cut(s)	23, 457
ErhI	CCWWGG	1 cut(s)	606
FaeI	CATG	2 cut(s)	459, 610
FatI	CATG	2 cut(s)	455, 606
FbaI	TGATCA	1 cut(s)	336
FblI	GTMKAC	1 cut(s)	436
Fnu4HI	GCNGC	1 cut(s)	172
FokI	GGATG	5 cut(s)	118, 213, 220, 314, 345
Fsp4HI	GCNGC	1 cut(s)	172
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	669
HapII	CCGG	2 cut(s)	365, 432
Hin1II	CATG	2 cut(s)	459, 610
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HinfI	GANTC	1 cut(s)	767
HpaII	CCGG	2 cut(s)	365, 432
HphI	GGTGA	2 cut(s)	722, 773
Hpy166II	GTNNAC	3 cut(s)	437, 590, 613
Hpy188I	TCNGA	2 cut(s)	214, 275
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	3 cut(s)	437, 590, 613
HpyAV	CCTTC	3 cut(s)	86, 322, 672
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	592
HpyCH4V	TGCA	7 cut(s)	21, 250, 358, 404, 455, 646, 736
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpyF3I	CTNAG	4 cut(s)	213, 617, 695, 771
HpySE526I	ACGT	1 cut(s)	592
Hsp92II	CATG	2 cut(s)	459, 610
Ksp22I	TGATCA	1 cut(s)	336
Kzo9I	GATC	2 cut(s)	82, 336
LweI	GCATC	3 cut(s)	235, 367, 391
MaeI	CTAG	1 cut(s)	384
MaeII	ACGT	1 cut(s)	592
MaeIII	GTNAC	3 cut(s)	416, 620, 652
MalI	GATC	2 cut(s)	84, 338
MboI	GATC	2 cut(s)	82, 336
MboII	GAAGA	9 cut(s)	480, 509, 622, 666, 761, 799, 800, 809, 811
MfeI	CAATTG	1 cut(s)	823
MluCI	AATT	7 cut(s)	133, 192, 245, 319, 387, 560, 823
MmeI	TCCRAC	2 cut(s)	253, 292
Mph1103I	ATGCAT	2 cut(s)	23, 457
MseI	TTAA	1 cut(s)	450
MspI	CCGG	2 cut(s)	365, 432
MunI	CAATTG	1 cut(s)	823
Mva1269I	GAATGC	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	223
NcoI	CCATGG	1 cut(s)	606
NdeII	GATC	2 cut(s)	82, 336
NlaIII	CATG	2 cut(s)	459, 610
NlaIV	GGNNCC	4 cut(s)	175, 369, 492, 670
NmeAIII	GCCGAG	1 cut(s)	618
NmuCI	GTSAC	1 cut(s)	620
NsiI	ATGCAT	2 cut(s)	23, 457
PaqCI	CACCTGC	1 cut(s)	741
PctI	GAATGC	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	767
PflFI	GACNNNGTC	1 cut(s)	626
PkrI	GCNGC	1 cut(s)	173
Ppu21I	YACGTR	1 cut(s)	593
PsiI	TTATAA	2 cut(s)	521, 540
PspN4I	GGNNCC	4 cut(s)	175, 369, 492, 670
PspPI	GGNCC	1 cut(s)	668
PsyI	GACNNNGTC	1 cut(s)	626
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	1 cut(s)	172
Sau3AI	GATC	2 cut(s)	82, 336
Sau96I	GGNCC	1 cut(s)	668
SetI	ASST	7 cut(s)	64, 97, 219, 261, 595, 618, 735
SfaNI	GCATC	3 cut(s)	235, 367, 391
Sse9I	AATT	7 cut(s)	133, 192, 245, 319, 387, 560, 823
SsiI	CCGC	1 cut(s)	171
SspMI	CTAG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	1 cut(s)	595
TasI	AATT	7 cut(s)	133, 192, 245, 319, 387, 560, 823
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	767
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	2 cut(s)	85, 339
TseFI	GTSAC	1 cut(s)	620
Tsp45I	GTSAC	1 cut(s)	620
TspDTI	ATGAA	2 cut(s)	332, 799
TspRI	CASTG	2 cut(s)	85, 339
Tth111I	GACNNNGTC	1 cut(s)	626
XapI	RAATTY	1 cut(s)	133
XmiI	GTMKAC	1 cut(s)	436
XspI	CTAG	1 cut(s)	384
Zsp2I	ATGCAT	2 cut(s)	23, 457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.