RchiOBHm_Chr5g0037551

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
32132672 .. 32134098
1427 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 222 bp
ATGAAAGAAGCAGATGTAAAACCAGATTCCCACACTTTCAGCCATCTAATAACCAACTGCAACTCTGAAGAGGACATAAACATGTATTATGAAGAAATGAAGCGATCTGGAATTCAAGTTACAAAGCAAGTTTTCATGGCACTTGTAAATGCATATGCAGCTTGTGGACAGTTTGAAAAGGCAAAACAGGTATCTCTGCTTCTGGCAACTTTGTTGTACTAA

Protein Analysis

73

Amino Acids

8.31

Weight (kDa)

5.53

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 87
AfaI GTAC 1 cut(s) 218
AflIII ACRYGT 1 cut(s) 81
AgsI TTSAA 2 cut(s) 116, 176
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 111
BarI GAAGNNNNNNTAC 2 cut(s) 183, 215
BbvI GCAGC 1 cut(s) 170
BccI CCATC 1 cut(s) 51
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
BseXI GCAGC 1 cut(s) 170
Bsp143I GATC 1 cut(s) 104
BssMI GATC 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 63
BstKTI GATC 1 cut(s) 107
BstMBI GATC 1 cut(s) 104
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 217
CviAII CATG 2 cut(s) 82, 136
CviJI RGCY 2 cut(s) 42, 161
CviKI_1 RGCY 2 cut(s) 42, 161
CviQI GTAC 1 cut(s) 217
DpnI GATC 1 cut(s) 106
DpnII GATC 1 cut(s) 104
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 87
EcoRI GAATTC 1 cut(s) 111
EcoT22I ATGCAT 1 cut(s) 154
FaeI CATG 2 cut(s) 85, 139
FaiI YATR 6 cut(s) 77, 83, 90, 137, 154, 156
FatI CATG 2 cut(s) 81, 135
FauNDI CATATG 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 159
Hin1II CATG 2 cut(s) 85, 139
HinfI GANTC 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 108
Hpy8I GTNNAC 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4V TGCA 3 cut(s) 60, 152, 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
Hsp92II CATG 2 cut(s) 85, 139
Kzo9I GATC 1 cut(s) 104
LpnPI CCDG 4 cut(s) 36, 93, 173, 188
Lsp1109I GCAGC 1 cut(s) 170
MaeIII GTNAC 1 cut(s) 118
MalI GATC 1 cut(s) 106
MboI GATC 1 cut(s) 104
MboII GAAGA 2 cut(s) 80, 104
MluCI AATT 1 cut(s) 111
MnlI CCTC 1 cut(s) 64
Mph1103I ATGCAT 1 cut(s) 154
MslI CAYNNNNRTG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeI CATATG 1 cut(s) 154
NdeII GATC 1 cut(s) 104
NlaIII CATG 2 cut(s) 85, 139
NsiI ATGCAT 1 cut(s) 154
NspI RCATGY 1 cut(s) 85
PciI ACATGT 1 cut(s) 81
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 160
PscI ACATGT 1 cut(s) 81
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 80
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 1 cut(s) 104
SetI ASST 2 cut(s) 163, 192
SmiMI CAYNNNNRTG 1 cut(s) 80
Sse9I AATT 1 cut(s) 111
TaaI ACNGT 1 cut(s) 171
TasI AATT 1 cut(s) 111
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 1 cut(s) 26
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 4 cut(s) 17, 105, 113, 124
XapI RAATTY 1 cut(s) 111
XceI RCATGY 1 cut(s) 85
Zsp2I ATGCAT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.