RchiOBHm_Chr5g0037881

Domain of unknown function (DUF3475)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
32514397 .. 32519210
4814 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGAATTTGAAGGTTGCATATATTCAAGAAGCTGAGAGAGCCAAGTTTTTTGACACTCAGAGGGATAGGTTATACTGGAAACGAAAAGAAGAGTTGTCTAGAGCCTTATCGCAAAAAAGTAGAGCTACCAAGTCTCAGCAGGCTGTTGCAAAGGTATCAGAAGTGAGCTCTCGTTTGGGCAGTGCTAGTACTGCTGGACTTGGGAAGGCTGTGGAAGTTTTGGACACCCTTGGCAGTAGCATGACAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

83

Amino Acids

9.21

Weight (kDa)

9.99

Isoelectric Point (pI)

29.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 1 cut(s) 190
AgsI TTSAA 2 cut(s) 10, 26
AluBI AGCT 3 cut(s) 32, 125, 168
AluI AGCT 3 cut(s) 32, 125, 168
Alw21I GWGCWC 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 138
ApoI RAATTY 1 cut(s) 4
BanII GRGCYC 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 2 cut(s) 99, 186
BmcAI AGTACT 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 229
BseMII CTCAG 3 cut(s) 24, 71, 149
BseNI ACTGG 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 170
BspCNI CTCAG 3 cut(s) 25, 70, 148
BsrI ACTGG 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 229
BssT1I CCWWGG 1 cut(s) 229
Bst6I CTCTTC 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 3 cut(s) 33, 57, 135
BstMAI GTCTC 1 cut(s) 138
BstMWI GCNNNNNNNGC 2 cut(s) 38, 191
BtsI GCAGTG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 187
Cac8I GCNNGC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 189
CviAII CATG 1 cut(s) 241
CviJI RGCY 7 cut(s) 32, 41, 104, 125, 143, 168, 209
CviKI_1 RGCY 7 cut(s) 32, 41, 104, 125, 143, 168, 209
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 3 cut(s) 33, 57, 135
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 168
EcoICRI GAGCTC 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 229
FaeI CATG 1 cut(s) 244
FaiI YATR 4 cut(s) 19, 21, 73, 242
FatI CATG 1 cut(s) 240
FriOI GRGCYC 1 cut(s) 170
FspBI CTAG 2 cut(s) 99, 186
Hin1II CATG 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 60, 160
Hpy188III TCNNGA 2 cut(s) 26, 99
HpyAV CCTTC 2 cut(s) 4, 199
HpyCH4V TGCA 2 cut(s) 17, 149
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 191
HpyF3I CTNAG 3 cut(s) 33, 57, 135
Hsp92II CATG 1 cut(s) 244
LpnPI CCDG 3 cut(s) 61, 125, 180
MaeI CTAG 2 cut(s) 99, 186
MboII GAAGA 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 2 cut(s) 4, 247
MnlI CCTC 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 38, 191
NlaIII CATG 1 cut(s) 244
Psp124BI GAGCTC 1 cut(s) 170
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SacI GAGCTC 1 cut(s) 170
ScaI AGTACT 1 cut(s) 190
SduI GDGCHC 1 cut(s) 170
SetI ASST 6 cut(s) 15, 34, 71, 127, 156, 170
Sse9I AATT 2 cut(s) 4, 247
SspMI CTAG 2 cut(s) 99, 186
SstI GAGCTC 1 cut(s) 170
StyI CCWWGG 1 cut(s) 229
TasI AATT 2 cut(s) 4, 247
TatI WGTACW 1 cut(s) 188
TscAI CASTG 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 187
XapI RAATTY 1 cut(s) 4
XbaI TCTAGA 1 cut(s) 98
XspI CTAG 2 cut(s) 99, 186
ZrmI AGTACT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.