RchiOBHm_Chr5g0038061

(-)-germacrene D synthase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
32710153 .. 32710923
771 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 210 bp
ATGGGAGATATCGTTACAAAAGACTCCTTTGAGTGGATCTTCAGTGACCCTAAGATTGTAAAGACTTCATCAGTAGTTTGCAGACTCATGGATGACATTGTATCCCACAAGTTTGAACAAAAGAGAGGACATGTTGCCTCGGCTGTGGAATGTTACATGAAACAATACGGTGCAACAGAAGAAGAAACCATAATTGAATTTCGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

7.98

Weight (kDa)

5.23

Isoelectric Point (pI)

49.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 1 - 68 7e-26 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 1 - 68 1.8e-19 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 44
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 33
AflIII ACRYGT 1 cut(s) 130
AgsI TTSAA 2 cut(s) 116, 197
AlwI GGATC 1 cut(s) 44
ApoI RAATTY 1 cut(s) 197
BciVI GTATCC 1 cut(s) 112
BfuI GTATCC 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 138
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 33
Bsp143I GATC 1 cut(s) 36
BspPI GGATC 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstNSI RCATGY 1 cut(s) 134
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuI GTATCC 1 cut(s) 112
BtsCI GGATG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 49
CviAII CATG 3 cut(s) 88, 131, 157
CviJI RGCY 1 cut(s) 143
CviKI_1 RGCY 1 cut(s) 143
DdeI CTNAG 1 cut(s) 51
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eco32I GATATC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 25
EcoRV GATATC 1 cut(s) 10
FaeI CATG 3 cut(s) 91, 134, 160
FaiI YATR 4 cut(s) 89, 132, 158, 191
FatI CATG 3 cut(s) 87, 130, 156
FokI GGATG 1 cut(s) 104
Hin1II CATG 3 cut(s) 91, 134, 160
HinfI GANTC 2 cut(s) 23, 84
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4V TGCA 2 cut(s) 81, 173
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 3 cut(s) 91, 134, 160
Kzo9I GATC 1 cut(s) 36
MaeIII GTNAC 3 cut(s) 13, 44, 152
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 3 cut(s) 31, 191, 194
MflI RGATCY 1 cut(s) 36
MluCI AATT 3 cut(s) 192, 197, 205
MlyI GAGTC 2 cut(s) 17, 78
MnlI CCTC 2 cut(s) 119, 148
MseI TTAA 1 cut(s) 208
NdeII GATC 1 cut(s) 36
NlaIII CATG 3 cut(s) 91, 134, 160
NmeAIII GCCGAG 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 44
NspI RCATGY 1 cut(s) 134
PciI ACATGT 1 cut(s) 130
PleI GAGTC 2 cut(s) 17, 78
PpsI GAGTC 2 cut(s) 17, 78
PscI ACATGT 1 cut(s) 130
PsuI RGATCY 1 cut(s) 36
SaqAI TTAA 1 cut(s) 208
Sau3AI GATC 1 cut(s) 36
SchI GAGTC 2 cut(s) 17, 78
SgeI CNNG 5 cut(s) 100, 121, 143, 151, 169
Sse9I AATT 3 cut(s) 192, 197, 205
TaaI ACNGT 1 cut(s) 170
TasI AATT 3 cut(s) 192, 197, 205
Tru1I TTAA 1 cut(s) 208
Tru9I TTAA 1 cut(s) 208
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 2 cut(s) 57, 173
TspRI CASTG 1 cut(s) 49
XapI RAATTY 1 cut(s) 197
XceI RCATGY 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.