RchiOBHm_Chr5g0038501

Zinc-dependent metalloprotease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
33088474 .. 33088920
447 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 228 bp
ATGTATCGACTAACCGCTCCCACTGCTTGTGCAATGTCTTGTCTTGTGCACACCATAGCGAATATTAAGCTACCCACTGCTGATGCATACGGTACTCAAGACATTTCCATCCTCTCTGCTTCGTTGCTAGGGCTCATACTTAAGGATAACTTGAAATTAATAGGAAGAGGGGTAGAGATTGACTCACAATCTTGCATGTTGAAGCGACACAAGATTTTCTTTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF716

Protein Analysis

75

Amino Acids

8.22

Weight (kDa)

9.22

Isoelectric Point (pI)

63.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 17
AciI CCGC 1 cut(s) 15
AfaI GTAC 1 cut(s) 94
AflII CTTAAG 1 cut(s) 140
AgsI TTSAA 2 cut(s) 154, 202
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw21I GWGCWC 1 cut(s) 51
Alw44I GTGCAC 1 cut(s) 47
ApaLI GTGCAC 1 cut(s) 47
AseI ATTAAT 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 51
BanII GRGCYC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 51
BccI CCATC 1 cut(s) 116
BfaI CTAG 1 cut(s) 128
BfrI CTTAAG 1 cut(s) 140
BmsI GCATC 1 cut(s) 73
BplI GAGNNNNNCTC 2 cut(s) 167, 199
BpuEI CTTGAG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 39
BseGI GGATG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 39
BseSI GKGCMC 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 51
Bsp1286I GDGCHC 2 cut(s) 51, 135
BspACI CCGC 1 cut(s) 15
BspTI CTTAAG 1 cut(s) 140
BsrBI CCGCTC 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 160
BstAFI CTTAAG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 108
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 51
BtsCI GGATG 1 cut(s) 108
BtsI GCAGTG 2 cut(s) 21, 75
BtsIMutI CAGTG 2 cut(s) 21, 75
Csp6I GTAC 1 cut(s) 93
CviAII CATG 1 cut(s) 196
CviJI RGCY 2 cut(s) 70, 133
CviKI_1 RGCY 2 cut(s) 70, 133
CviQI GTAC 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 135
EcoT22I ATGCAT 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 135
FaeI CATG 1 cut(s) 199
FaiI YATR 4 cut(s) 56, 88, 137, 197
FalI AAGNNNNNCTT 3 cut(s) 134, 166, 203
FatI CATG 1 cut(s) 195
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 1 cut(s) 135
FspBI CTAG 1 cut(s) 128
Hin1II CATG 1 cut(s) 199
HinfI GANTC 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 4 cut(s) 32, 49, 86, 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
Hsp92II CATG 1 cut(s) 199
LmnI GCTCC 1 cut(s) 22
LweI GCATC 1 cut(s) 73
MaeI CTAG 1 cut(s) 128
MbiI CCGCTC 1 cut(s) 17
MboII GAAGA 1 cut(s) 177
MhlI GDGCHC 2 cut(s) 51, 135
MluCI AATT 1 cut(s) 155
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 2 cut(s) 122, 161
Mph1103I ATGCAT 1 cut(s) 88
MseI TTAA 4 cut(s) 66, 141, 158, 222
MspCI CTTAAG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 23
NlaIII CATG 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 88
NspI RCATGY 1 cut(s) 199
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PshBI ATTAAT 1 cut(s) 158
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
SaqAI TTAA 4 cut(s) 66, 141, 158, 222
SchI GAGTC 1 cut(s) 176
SduI GDGCHC 2 cut(s) 51, 135
SetI ASST 1 cut(s) 72
SfaNI GCATC 1 cut(s) 73
SgeI CNNG 9 cut(s) 39, 51, 56, 110, 140, 163, 204, 208, 223
SmlI CTYRAG 2 cut(s) 96, 140
SmoI CTYRAG 2 cut(s) 96, 140
Sse9I AATT 1 cut(s) 155
SsiI CCGC 1 cut(s) 15
SspI AATATT 1 cut(s) 64
SspMI CTAG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 7
TasI AATT 1 cut(s) 155
Tru1I TTAA 4 cut(s) 66, 141, 158, 222
Tru9I TTAA 4 cut(s) 66, 141, 158, 222
TscAI CASTG 2 cut(s) 28, 82
TspRI CASTG 2 cut(s) 28, 82
Vha464I CTTAAG 1 cut(s) 140
VneI GTGCAC 1 cut(s) 47
VspI ATTAAT 1 cut(s) 158
XceI RCATGY 1 cut(s) 199
XspI CTAG 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.