RchiOBHm_Chr5g0038971

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
33714342 .. 33715396
1055 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 174 bp
ATGTATTGTTGTTGTATGTTACAGTTGACTAGAAAAAAAAAAATTAACTCACCTTGTTGGTCCACTCAGGGTACACTGGCTCATGTTCAGTACTACCCTCAGAAGCCGCTTGTCATTACACGAGCCATGGAGCATCTTCACTTCAGGCAACTTCCAGCTGGAATTGGTTTGTGA

Protein Analysis

57

Amino Acids

6.6

Weight (kDa)

9.56

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 127
AfaI GTAC 2 cut(s) 73, 92
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 42
AvaII GGWCC 1 cut(s) 60
BauI CACGAG 1 cut(s) 120
BfaI CTAG 1 cut(s) 30
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
BmcAI AGTACT 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 60
BmsI GCATC 1 cut(s) 142
BsaJI CCNNGG 1 cut(s) 126
Bse1I ACTGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 126
BseMII CTCAG 2 cut(s) 80, 113
BseNI ACTGG 1 cut(s) 81
Bsp19I CCATGG 1 cut(s) 126
BspACI CCGC 1 cut(s) 107
BspCNI CTCAG 2 cut(s) 79, 112
BsrI ACTGG 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 126
BssSI CACGAG 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 126
Bst2BI CACGAG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 24
BstDEI CTNAG 2 cut(s) 66, 99
BstDSI CCRYGG 1 cut(s) 126
BtgI CCRYGG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 60
Csp6I GTAC 2 cut(s) 72, 91
CviAII CATG 2 cut(s) 83, 127
CviJI RGCY 4 cut(s) 80, 106, 125, 158
CviKI_1 RGCY 4 cut(s) 80, 106, 125, 158
CviQI GTAC 2 cut(s) 72, 91
DdeI CTNAG 2 cut(s) 66, 99
Eco130I CCWWGG 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 86, 130
FaiI YATR 3 cut(s) 17, 84, 128
FatI CATG 2 cut(s) 82, 126
Fnu4HI GCNGC 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 107
FspBI CTAG 1 cut(s) 30
GluI GCNGC 1 cut(s) 107
Hin1II CATG 2 cut(s) 86, 130
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HphI GGTGA 1 cut(s) 42
Hpy166II GTNNAC 3 cut(s) 27, 63, 74
Hpy188I TCNGA 1 cut(s) 102
Hpy8I GTNNAC 3 cut(s) 27, 63, 74
HpyCH4III ACNGT 1 cut(s) 24
HpyF3I CTNAG 2 cut(s) 66, 99
Hsp92II CATG 2 cut(s) 86, 130
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 5 cut(s) 53, 62, 130, 144, 168
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 18
MboII GAAGA 1 cut(s) 128
MluCI AATT 2 cut(s) 42, 162
MnlI CCTC 1 cut(s) 108
MseI TTAA 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 158
NcoI CCATGG 1 cut(s) 126
NlaIII CATG 2 cut(s) 86, 130
PkrI GCNGC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 60
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 2 cut(s) 73, 92
RsaNI GTAC 2 cut(s) 72, 91
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 107
Sau96I GGNCC 1 cut(s) 60
ScaI AGTACT 1 cut(s) 92
SetI ASST 2 cut(s) 55, 160
SfaNI GCATC 1 cut(s) 142
SinI GGWCC 1 cut(s) 60
Sse9I AATT 2 cut(s) 42, 162
SsiI CCGC 1 cut(s) 107
SspMI CTAG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 24
TasI AATT 2 cut(s) 42, 162
TatI WGTACW 1 cut(s) 90
TauI GCSGC 1 cut(s) 109
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 1 cut(s) 81
TspRI CASTG 1 cut(s) 81
VpaK11BI GGWCC 1 cut(s) 60
XspI CTAG 1 cut(s) 30
ZrmI AGTACT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.