Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

34174547 .. 34176531

Gene Structure 1985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTTCAATGAACATTTGATATCAGATACCATATTACTCTTAGTTGTGTGTACCGAGTGTTTGGTTTTGCAATATCTATATGATTTTGACTTGGCCGAGCACGAAGAGAAGAGACACTTGATGTTAAACACCTTTGGTAGAACCACTGTACTTGTTCATTCACCCTGGCTATCTTTTTGCTTCGCGGACTTTCCATCACCAGCTCCAGCACGCTCAACATTTCAGGTAGCAGCATTGCCTTTGGATGCCAAGATTGAAATTGAGTGCATTGCAGCACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016053 GO:0016787 GO:0019239 GO:0019752 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0050896 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuc_L-PSP

Protein Analysis

93

Amino Acids

10.56

Weight (kDa)

4.75

Isoelectric Point (pI)

78.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_L-PSP	PF01042	67 - 92	3e-06	Endoribonuclease L-PSP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	185
AciI	CCGC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	93
AfaI	GTAC	2 cut(s)	52, 150
AgsI	TTSAA	2 cut(s)	7, 257
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	106
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	230, 272
AsuHPI	GGTGA	2 cut(s)	153, 189
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	106
BfmI	CTRYAG	1 cut(s)	278
BisI	GCNGC	2 cut(s)	231, 273
BlsI	GCNGC	2 cut(s)	232, 274
Bme1390I	CCNGG	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	166
BmsI	GCATC	1 cut(s)	235
BpmI	CTGGAG	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	164
Bse3DI	GCAATG	2 cut(s)	233, 267
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	1 cut(s)	250
BseMI	GCAATG	2 cut(s)	233, 267
BseXI	GCAGC	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	102
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	1 cut(s)	95
BspFNI	CGCG	1 cut(s)	185
BsrDI	GCAATG	2 cut(s)	233, 267
BssECI	CCNNGG	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	2 cut(s)	148, 279
Bst6I	CTCTTC	2 cut(s)	99, 104
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	250
BstFNI	CGCG	1 cut(s)	185
BstMAI	GTCTC	1 cut(s)	106
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	278
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	242
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	2 cut(s)	144, 275
Cac8I	GCNNGC	1 cut(s)	211
Csp6I	GTAC	2 cut(s)	51, 149
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviJI	RGCY	3 cut(s)	95, 169, 203
CviKI_1	RGCY	3 cut(s)	95, 169, 203
CviQI	GTAC	2 cut(s)	51, 149
DdeI	CTNAG	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	2 cut(s)	99, 104
EarI	CTCTTC	2 cut(s)	99, 104
Eco32I	GATATC	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	164
EcoRV	GATATC	1 cut(s)	21
FaiI	YATR	3 cut(s)	32, 79, 81
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
Fnu4HI	GCNGC	2 cut(s)	231, 273
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	2 cut(s)	231, 273
GluI	GCNGC	2 cut(s)	231, 273
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	95
HphI	GGTGA	2 cut(s)	153, 189
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	51
HpyCH4III	ACNGT	2 cut(s)	148, 279
HpyCH4V	TGCA	3 cut(s)	70, 267, 272
HpyF3I	CTNAG	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	5 cut(s)	151, 178, 209, 213, 219
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	1 cut(s)	235
MboII	GAAGA	2 cut(s)	116, 121
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	1 cut(s)	258
MseI	TTAA	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
MvnI	CGCG	1 cut(s)	185
NmeAIII	GCCGAG	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	232, 274
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
RsaI	GTAC	2 cut(s)	52, 150
RsaNI	GTAC	2 cut(s)	51, 149
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	2 cut(s)	231, 273
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	3 cut(s)	134, 205, 228
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	278
Sse9I	AATT	1 cut(s)	258
SsiI	CCGC	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	164
TaaI	ACNGT	2 cut(s)	148, 279
TasI	AATT	1 cut(s)	258
TatI	WGTACW	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TscAI	CASTG	2 cut(s)	151, 282
TseI	GCWGC	2 cut(s)	230, 272
TspDTI	ATGAA	2 cut(s)	24, 146
TspRI	CASTG	2 cut(s)	151, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.