RchiOBHm_Chr5g0039581

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
34318489 .. 34318883
395 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 348 bp
ATGTTTAAGGCAGAGGAATGCTTGAGGAGGGAGAAGGAGAGAGTTTTGCATTACCTGCATTCGAGCAGTGAGGAGAAGTTGTTGAAGAAAGTGCATTATGAGCTGGTGGTGGTTTTTGCACACCAACTGCTCGATGAAAGGGATTCTGGGTGTAGTGCTTTGCTTCGAGATAATAAGGTGGAGGATCAGGCTAGGATGTATAGGCTTTACAGTAGAACACTTAAAGAGTTGGAACTTCTTGTTAATGTGTTCAGAAAATATGTTACTGATGAAGGTAAAGCGTTTGTGCAGCAAGTAACCAGCAGGCTTCAAATGCAGAGCATGGGGTGGTCCTTATCAGAAAAATAA

Protein Analysis

115

Amino Acids

13.7

Weight (kDa)

8.55

Isoelectric Point (pI)

52.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cullin PF00888 1 - 101 5.2e-19 Cullin alpha solenoid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 63
AclWI GGATC 1 cut(s) 192
AgsI TTSAA 2 cut(s) 85, 311
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
AlwI GGATC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 289
AspS9I GGNCC 1 cut(s) 330
AvaII GGWCC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 301
BfaI CTAG 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 63
BisI GCNGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 330
BmgT120I GGNCC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
BseGI GGATG 1 cut(s) 201
BseRI GAGGAG 2 cut(s) 40, 86
BseXI GCAGC 1 cut(s) 301
BsgI GTGCAG 1 cut(s) 308
BsmI GAATGC 2 cut(s) 23, 58
Bsp143I GATC 1 cut(s) 184
BspMI ACCTGC 1 cut(s) 63
BspPI GGATC 1 cut(s) 192
BssMI GATC 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 212
BstAPI GCANNNNNTGC 1 cut(s) 55
BstC8I GCNNGC 1 cut(s) 305
BstF5I GGATG 1 cut(s) 201
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 3 cut(s) 55, 100, 313
BstV1I GCAGC 1 cut(s) 301
BtsCI GGATG 1 cut(s) 201
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 73
BveI ACCTGC 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 330
CviAII CATG 1 cut(s) 322
CviJI RGCY 4 cut(s) 103, 191, 205, 307
CviKI_1 RGCY 4 cut(s) 103, 191, 205, 307
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 330
FaeI CATG 1 cut(s) 325
FaiI YATR 4 cut(s) 99, 201, 261, 323
FatI CATG 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 290
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 1 cut(s) 290
FspBI CTAG 1 cut(s) 192
GluI GCNGC 1 cut(s) 290
Hin1II CATG 1 cut(s) 325
HinfI GANTC 1 cut(s) 143
Hpy188I TCNGA 2 cut(s) 254, 340
Hpy188III TCNNGA 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 28, 266
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4V TGCA 6 cut(s) 49, 58, 94, 119, 289, 316
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 100, 313
Hsp92II CATG 1 cut(s) 325
Kzo9I GATC 1 cut(s) 184
LpnPI CCDG 6 cut(s) 68, 89, 132, 173, 289, 313
Lsp1109I GCAGC 1 cut(s) 301
MaeI CTAG 1 cut(s) 192
MaeIII GTNAC 2 cut(s) 262, 295
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 1 cut(s) 97
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 5 cut(s) 7, 18, 21, 64, 175
MseI TTAA 3 cut(s) 6, 222, 243
Mva1269I GAATGC 2 cut(s) 23, 58
MwoI GCNNNNNNNGC 3 cut(s) 55, 100, 313
NdeII GATC 1 cut(s) 184
NlaIII CATG 1 cut(s) 325
PctI GAATGC 2 cut(s) 23, 58
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 1 cut(s) 291
PspPI GGNCC 1 cut(s) 330
SaqAI TTAA 3 cut(s) 6, 222, 243
SatI GCNGC 1 cut(s) 290
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 1 cut(s) 330
SetI ASST 4 cut(s) 57, 105, 180, 277
SinI GGWCC 1 cut(s) 330
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
SspMI CTAG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 212
TaqI TCGA 3 cut(s) 62, 132, 166
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 3 cut(s) 6, 222, 243
Tru9I TTAA 3 cut(s) 6, 222, 243
TscAI CASTG 1 cut(s) 73
TseI GCWGC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 150, 285
TspRI CASTG 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 330
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.