Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

34825267 .. 34833845

Gene Structure 8579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2328 bp

ATGGCCGCCACTGGTATACAATTTTGTGTTCTCTTTATTGTGTTGCAAGTGACTGTTTCTTCTCAACATGCTTTTGAGGGAATATTAAACAGTCTCCCAAAGCCTGGAGGTGGCAAATTCGGAAAATTTTACAGTCTACCTGCTCTAAATGATCCAAGAATTGACAGGCTTCCATATTCAATAAAGATACTTTTGGAATGTGCAATCCGTAACTGTGACAACTTCCAAATTACCAAGGAAGATGTTGAAAAGATAGCTGATTGGGAGAATACATCACCAAAGCAAGTTGAAATACCCTTTAAGCCTGCTCGTGTTCTCCTCCAGGACTTCACTGGAGTACCAGCAGTGATTGACCTTGCATGTATCCGGGATGCCATGGAGGAGCTTGGAAATGATCCCAACAAGATAAATCCATTGGTTCCTGTAGACCTTGTTGTTGATCATTCGGTTACAGTTGATGTAGCAAGAACTAGATTTGCTTTCCTTAAATGGGGATCTTTTGCATTCCATAACATGCTTGTAGTACCTTCTGGTTCTGGAATTGTCCATCAGGTTAATCTGGAATACCTTGCCAGGGTTGTTTTCGAAACTGATGGAATTCTATACCCTGATAGCGTGGTTGGTACCGATTCGGCCGCCATTCAGGGGCGGAACTACTATAGTAGTAGAAGGGCTGAGGCAACAATGCTTGTTCAGCCCATTAGCATGGTCTTACCTGGTGTTGTTGGGTTCAAGCTTACTGGGCAACTGCGTGAAGGTGTCACTGCTACCGACTTAGTTTTAACTGTGACACAAATGTTGAAGAAACATTGTGTTGTTGGCAAGTTTGTCGAGTTCTATGGTGAGGGCATGGGTGAAATATCACTCGCTGACAGGGCCACAATTGCAAACATGTCTCCTGAATATGGAGCAACCATGGGCTTCTTTCCTGTAGATCATGTTACATTGCAGTATCTTAAACTGACTGGAAGAAGTGATGAGAAGGTTGCAATGATAGAATCATACTTGAGGGCAAACAAAATGTTCATCGACTACAATGAGGACATGAAGGCTGATTGGCATGCATGCCTAAATAGCAAAGTTGGATTCAAAGTGAGTTCTGACAACCTATACGGCAAGATGATACACTTCCCCATTCCCCCCATTGTTTCATTCCAACTCATATCTGCTATATCTGTGATCATTAATAATGTTTATCTGATTTATAGTCCTGACATCATTGCTGCAGCTGTTCTTTCTGGAAACCGGAACTTTGAAGGTCGTATTCACCCGTTAACAAGAGCTAACTATCTTGCTTCGCCTCCATTGGTTGTTGCCTACGCACTTGCTGGCACGGTTGACATTAATTTCGATCAAGAGCCAATTGGAAAAGGGAAGGATGGGAAGAGTGTGTACTTGAAGGATATCTGGCCTAGTAATGAAGAAATTGCACAGGTATTTCAATCTCTTGTCTTACCTGATATGTTTAAGAACACATATGAGGCCATTACAAAGGGTAGCCGTTTGTGGAATGAGCTCTCTGTCCCTTCTTCGACTCTTTATACTTGGGATGCAAACTCGACCTACATTCACAAGCCCCCATATTTAAAGAACATGAGCATGGAACTACCAGGTCCTCGTGGCGTAAAGGATGCATATTGTTTGCTGTATTTAGGCGACAGTATAACCACAGATCATATTTCTCATGGAGGTACCATCCACAATGACAGCCTTGCTGCACAGTATCTCCGTGAGCTTGGGGTGGATCGCAAAGATTTCAATTCTTATGGTTGTCGACGGGGAAATGATGAGGTAATGGTACGGGGTACCTTTGCCAATATCCGCATTCTGAACAAATTATTGAATGGGGAAGTCGGTCCAAAAACAATTCACATTCCAACGGGGGAGAAACTTCATGTGTATGAAGCAGCAATGAGTTACAAGGCTGCTGATCAGGAAACTGTTGTCTTAGCTGGAGCAGAGTACGCATGGATGTGGCAGAGCTCGAGATTGGCCTGCCAAGGGTCCAATGCTACTATGAGAGCAGTTATAACCAAAAGCTTTGAAAGCATTCATCGTAGCAATCTGGTAGGGATGGGAATCATTCCCTTATGTTTCAAGCCAGGTGAGGATGCAGGAACCCTCAGATTGACCGGTCATGAGCACTACACGATTGACCTTCCTAGTAAAGTTAGTGAGATAAAGCCTGGCCAGGATGTCAGGGACGTCACAACTGATACAGGCAAATCCTTCACATGCACACTCCGTTTTGACACTCAGGTTGAGTTGGCATATTTTGACCATGGTGGCATTCTTCCATACGTCATTCGAAACCTTGCTAAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Aconitase Aconitase_C

Protein Analysis

775

Amino Acids

85.84

Weight (kDa)

6.12

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase	PF00330	83 - 357	1.4e-72	Aconitase family (aconitate hydratase)
Aconitase	PF00330	409 - 444	1e-10	Aconitase family (aconitate hydratase)
Aconitase_C	PF00694	573 - 700	4.4e-23	Aconitase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2030
AatII	GACGTC	1 cut(s)	2208
Acc36I	ACCTGC	1 cut(s)	148
Acc65I	GGTACC	3 cut(s)	623, 1691, 1805
AccB1I	GGYRCC	3 cut(s)	623, 1691, 1805
AccB7I	CCANNNNNTGG	1 cut(s)	104
AccI	GTMKAC	4 cut(s)	16, 136, 426, 1774
AciI	CCGC	4 cut(s)	6, 636, 649, 1822
AclWI	GGATC	4 cut(s)	146, 389, 502, 1752
AcoI	YGGCCR	3 cut(s)	3, 633, 2188
AcsI	RAATTY	3 cut(s)	116, 125, 597
AcyI	GRCGYC	1 cut(s)	2205
AfaI	GTAC	8 cut(s)	339, 525, 625, 1394, 1693, 1800, 1807, 1964
AfiI	CCNNNNNNNGG	7 cut(s)	104, 110, 490, 574, 645, 905, 2001
AflIII	ACRYGT	1 cut(s)	891
AgeI	ACCGGT	1 cut(s)	2132
AjnI	CCWGG	8 cut(s)	103, 321, 572, 715, 1609, 2101, 2185, 2190
Alw21I	GWGCWC	3 cut(s)	1518, 1985, 2145
Alw26I	GTCTC	2 cut(s)	98, 900
AlwI	GGATC	4 cut(s)	146, 389, 502, 1752
Ama87I	CYCGRG	1 cut(s)	1984
AoxI	GGCC	7 cut(s)	3, 633, 876, 1409, 1482, 1992, 2188
ApeKI	GCWGC	5 cut(s)	1223, 1226, 1715, 1907, 1925
ApoI	RAATTY	3 cut(s)	116, 125, 597
ArsI	GACNNNNNNTTYG	2 cut(s)	1331, 1363
AseI	ATTAAT	2 cut(s)	1185, 1344
AsiGI	ACCGGT	1 cut(s)	2132
Asp700I	GAANNNNTTC	1 cut(s)	2049
Asp718I	GGTACC	3 cut(s)	623, 1691, 1805
AspS9I	GGNCC	4 cut(s)	876, 1613, 1856, 2004
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	5 cut(s)	267, 854, 866, 1259, 2117
AsuII	TTCGAA	2 cut(s)	585, 2308
AvaI	CYCGRG	1 cut(s)	1984
AvaII	GGWCC	3 cut(s)	1613, 1856, 2004
BaeI	ACNNNNGTAYC	2 cut(s)	321, 354
BalI	TGGCCA	1 cut(s)	2190
BanI	GGYRCC	3 cut(s)	623, 1691, 1805
BanII	GRGCYC	2 cut(s)	1518, 1985
BarI	GAAGNNNNNNTAC	2 cut(s)	1376, 1408
BauI	CACGAG	2 cut(s)	309, 1617
Bbv12I	GWGCWC	3 cut(s)	1518, 1985, 2145
BbvCI	CCTCAGC	1 cut(s)	675
BbvI	GCAGC	5 cut(s)	1210, 1238, 1702, 1912, 1919
BccI	CCATC	5 cut(s)	555, 587, 1373, 1703, 2068
BceAI	ACGGC	2 cut(s)	1129, 1485
BcgI	CGANNNNNNTGC	2 cut(s)	811, 845
BciT130I	CCWGG	8 cut(s)	105, 323, 574, 717, 1611, 2103, 2187, 2192
BciVI	GTATCC	1 cut(s)	374
BclI	TGATCA	3 cut(s)	439, 1179, 1930
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	2 cut(s)	98, 900
BfaI	CTAG	3 cut(s)	471, 1413, 2163
BfmI	CTRYAG	4 cut(s)	423, 658, 930, 1224
BfuAI	ACCTGC	1 cut(s)	148
BfuI	GTATCC	1 cut(s)	374
BisI	GCNGC	7 cut(s)	6, 636, 1224, 1227, 1716, 1908, 1926
BlsI	GCNGC	7 cut(s)	7, 637, 1225, 1228, 1717, 1909, 1927
Bme1390I	CCNGG	9 cut(s)	105, 323, 368, 574, 717, 1611, 2103, 2187, 2192
Bme18I	GGWCC	3 cut(s)	1613, 1856, 2004
BmeT110I	CYCGRG	1 cut(s)	1984
BmgT120I	GGNCC	4 cut(s)	876, 1613, 1856, 2004
BmiI	GGNNCC	6 cut(s)	420, 625, 1693, 1807, 2005, 2119
BmrFI	CCNGG	9 cut(s)	105, 323, 368, 574, 717, 1611, 2103, 2187, 2192
BmrI	ACTGGG	1 cut(s)	750
BmsI	GCATC	4 cut(s)	361, 1540, 1621, 2101
BmuI	ACTGGG	1 cut(s)	750
BpmI	CTGGAG	4 cut(s)	126, 305, 354, 1974
Bpu10I	CCTNAGC	1 cut(s)	675
Bpu14I	TTCGAA	2 cut(s)	585, 2308
BpuEI	CTTGAG	1 cut(s)	1027
BpuMI	CCSGG	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	2078
BsaHI	GRCGYC	1 cut(s)	2205
BsaJI	CCNNGG	6 cut(s)	234, 375, 573, 915, 1999, 2281
BsaWI	WCCGGW	2 cut(s)	1245, 2132
BsaXI	ACNNNNNCTCC	2 cut(s)	1710, 1740
Bsc4I	CCNNNNNNNGG	7 cut(s)	104, 110, 490, 574, 645, 905, 2001
Bse118I	RCCGGY	1 cut(s)	2132
Bse1I	ACTGG	4 cut(s)	16, 337, 745, 970
Bse3DI	GCAATG	4 cut(s)	944, 996, 1218, 1917
Bse8I	GATNNNNATC	1 cut(s)	2078
BseBI	CCWGG	8 cut(s)	105, 323, 574, 717, 1611, 2103, 2187, 2192
BseDI	CCNNGG	6 cut(s)	234, 375, 573, 915, 1999, 2281
BseGI	GGATG	9 cut(s)	376, 1384, 1555, 1636, 1695, 1977, 2079, 2116, 2200
BseJI	GATNNNNATC	1 cut(s)	2078
BseLI	CCNNNNNNNGG	7 cut(s)	104, 110, 490, 574, 645, 905, 2001
BseMI	GCAATG	4 cut(s)	944, 996, 1218, 1917
BseMII	CTCAG	3 cut(s)	666, 2137, 2270
BseNI	ACTGG	4 cut(s)	16, 337, 745, 970
BseRI	GAGGAG	2 cut(s)	308, 395
BseX3I	CGGCCG	1 cut(s)	633
BseXI	GCAGC	5 cut(s)	1210, 1238, 1702, 1912, 1919
BsgI	GTGCAG	1 cut(s)	1701
Bsh1285I	CGRYCG	1 cut(s)	636
BshFI	GGCC	7 cut(s)	5, 635, 878, 1411, 1484, 1994, 2190
BshNI	GGYRCC	3 cut(s)	623, 1691, 1805
BshTI	ACCGGT	1 cut(s)	2132
BsiEI	CGRYCG	1 cut(s)	636
BsiHKAI	GWGCWC	3 cut(s)	1518, 1985, 2145
BsiHKCI	CYCGRG	1 cut(s)	1984
BsiSI	CCGG	3 cut(s)	367, 1246, 2133
BslFI	GGGAC	2 cut(s)	1508, 2216
BslI	CCNNNNNNNGG	7 cut(s)	104, 110, 490, 574, 645, 905, 2001
BsmAI	GTCTC	2 cut(s)	98, 900
BsmFI	GGGAC	2 cut(s)	1508, 2216
BsmI	GAATGC	4 cut(s)	503, 1824, 2049, 2289
BsnI	GGCC	7 cut(s)	5, 635, 878, 1411, 1484, 1994, 2190
BsoBI	CYCGRG	1 cut(s)	1984
Bsp119I	TTCGAA	2 cut(s)	585, 2308
Bsp1286I	GDGCHC	3 cut(s)	1518, 1985, 2145
Bsp19I	CCATGG	3 cut(s)	375, 915, 2281
BspACI	CCGC	4 cut(s)	6, 636, 649, 1822
BspANI	GGCC	7 cut(s)	5, 635, 878, 1411, 1484, 1994, 2190
BspCNI	CTCAG	3 cut(s)	667, 2136, 2269
BspHI	TCATGA	1 cut(s)	2137
BspLI	GGNNCC	6 cut(s)	420, 625, 1693, 1807, 2005, 2119
BspMAI	CTGCAG	1 cut(s)	1228
BspMI	ACCTGC	1 cut(s)	148
BspPI	GGATC	4 cut(s)	146, 389, 502, 1752
BspT104I	TTCGAA	2 cut(s)	585, 2308
BspT107I	GGYRCC	3 cut(s)	623, 1691, 1805
BsrDI	GCAATG	4 cut(s)	944, 996, 1218, 1917
BsrFI	RCCGGY	1 cut(s)	2132
BsrI	ACTGG	4 cut(s)	16, 337, 745, 970
BssAI	RCCGGY	1 cut(s)	2132
BssECI	CCNNGG	6 cut(s)	234, 375, 573, 915, 1999, 2281
BssNAI	GTATAC	1 cut(s)	17
BssNI	GRCGYC	1 cut(s)	2205
BssSI	CACGAG	2 cut(s)	309, 1617
BssT1I	CCWWGG	5 cut(s)	234, 375, 915, 1999, 2281
Bst1107I	GTATAC	1 cut(s)	17
Bst2BI	CACGAG	2 cut(s)	309, 1617
Bst2UI	CCWGG	8 cut(s)	105, 323, 574, 717, 1611, 2103, 2187, 2192
Bst6I	CTCTTC	1 cut(s)	1379
BstACI	GRCGYC	1 cut(s)	2205
BstBI	TTCGAA	2 cut(s)	585, 2308
BstC8I	GCNNGC	5 cut(s)	306, 1062, 1066, 1330, 1996
BstDEI	CTNAG	5 cut(s)	675, 775, 1948, 2123, 2256
BstDSI	CCRYGG	3 cut(s)	375, 915, 2281
BstF5I	GGATG	9 cut(s)	376, 1384, 1555, 1636, 1695, 1977, 2079, 2116, 2200
BstMAI	GTCTC	2 cut(s)	98, 900
BstMCI	CGRYCG	1 cut(s)	636
BstMWI	GCNNNNNNNGC	7 cut(s)	694, 742, 875, 884, 1074, 1964, 2046
BstNI	CCWGG	8 cut(s)	105, 323, 574, 717, 1611, 2103, 2187, 2192
BstNSI	RCATGY	7 cut(s)	71, 363, 517, 895, 1064, 1068, 2238
BstSCI	CCNGG	9 cut(s)	103, 321, 366, 572, 715, 1609, 2101, 2185, 2190
BstSFI	CTRYAG	4 cut(s)	423, 658, 930, 1224
BstV1I	GCAGC	5 cut(s)	1210, 1238, 1702, 1912, 1919
BstX2I	RGATCY	1 cut(s)	494
BstXI	CCANNNNNNTGG	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	494
BstZ17I	GTATAC	1 cut(s)	17
BstZI	CGGCCG	1 cut(s)	633
BsuI	GTATCC	1 cut(s)	374
BsuRI	GGCC	7 cut(s)	5, 635, 878, 1411, 1484, 1994, 2190
BtgI	CCRYGG	3 cut(s)	375, 915, 2281
BtsCI	GGATG	9 cut(s)	376, 1384, 1555, 1636, 1695, 1977, 2079, 2116, 2200
BtsI	GCAGTG	2 cut(s)	351, 762
BtsIMutI	CAGTG	4 cut(s)	9, 330, 351, 762
BveI	ACCTGC	1 cut(s)	148
Cac8I	GCNNGC	5 cut(s)	306, 1062, 1066, 1330, 1996
CciI	TCATGA	1 cut(s)	2137
Cfr10I	RCCGGY	1 cut(s)	2132
Cfr13I	GGNCC	4 cut(s)	876, 1613, 1856, 2004
CsiI	ACCWGGT	2 cut(s)	715, 1609
Csp6I	GTAC	8 cut(s)	338, 524, 624, 1393, 1692, 1799, 1806, 1963
CspAI	ACCGGT	1 cut(s)	2132
CviQI	GTAC	8 cut(s)	338, 524, 624, 1393, 1692, 1799, 1806, 1963
DdeI	CTNAG	5 cut(s)	675, 775, 1948, 2123, 2256
DraI	TTTAAA	1 cut(s)	1587
EaeI	YGGCCR	3 cut(s)	3, 633, 2188
EagI	CGGCCG	1 cut(s)	633
Eam1104I	CTCTTC	1 cut(s)	1379
EarI	CTCTTC	1 cut(s)	1379
EciI	GGCGGA	1 cut(s)	664
Ecl136II	GAGCTC	2 cut(s)	1516, 1983
EclXI	CGGCCG	1 cut(s)	633
Eco130I	CCWWGG	5 cut(s)	234, 375, 915, 1999, 2281
Eco24I	GRGCYC	2 cut(s)	1518, 1985
Eco32I	GATATC	1 cut(s)	1405
Eco47I	GGWCC	3 cut(s)	1613, 1856, 2004
Eco52I	CGGCCG	1 cut(s)	633
Eco53kI	GAGCTC	2 cut(s)	1516, 1983
Eco88I	CYCGRG	1 cut(s)	1984
EcoICRI	GAGCTC	2 cut(s)	1516, 1983
EcoO109I	RGGNCCY	1 cut(s)	1613
EcoRI	GAATTC	1 cut(s)	597
EcoRII	CCWGG	8 cut(s)	103, 321, 572, 715, 1609, 2101, 2185, 2190
EcoRV	GATATC	1 cut(s)	1405
EcoT14I	CCWWGG	5 cut(s)	234, 375, 915, 1999, 2281
EcoT22I	ATGCAT	2 cut(s)	1066, 1636
EcoT38I	GRGCYC	2 cut(s)	1518, 1985
ErhI	CCWWGG	5 cut(s)	234, 375, 915, 1999, 2281
FaqI	GGGAC	2 cut(s)	1508, 2216
FauNDI	CATATG	1 cut(s)	1477
FbaI	TGATCA	3 cut(s)	439, 1179, 1930
FblI	GTMKAC	4 cut(s)	16, 136, 426, 1774
Fnu4HI	GCNGC	7 cut(s)	6, 636, 1224, 1227, 1716, 1908, 1926
FokI	GGATG	9 cut(s)	383, 1391, 1562, 1643, 1682, 1984, 2086, 2123, 2207
FriOI	GRGCYC	2 cut(s)	1518, 1985
Fsp4HI	GCNGC	7 cut(s)	6, 636, 1224, 1227, 1716, 1908, 1926
FspBI	CTAG	3 cut(s)	471, 1413, 2163
GluI	GCNGC	7 cut(s)	6, 636, 1224, 1227, 1716, 1908, 1926
GsuI	CTGGAG	4 cut(s)	126, 305, 354, 1974
HaeIII	GGCC	7 cut(s)	5, 635, 878, 1411, 1484, 1994, 2190
HapII	CCGG	3 cut(s)	367, 1246, 2133
Hin1I	GRCGYC	1 cut(s)	2205
HincII	GTYRAC	3 cut(s)	1275, 1339, 1775
HindII	GTYRAC	3 cut(s)	1275, 1339, 1775
HindIII	AAGCTT	2 cut(s)	734, 2038
HinfI	GANTC	5 cut(s)	629, 998, 1086, 1534, 2079
HpaI	GTTAAC	1 cut(s)	1275
HpaII	CCGG	3 cut(s)	367, 1246, 2133
HphI	GGTGA	5 cut(s)	267, 854, 866, 1259, 2117
Hpy166II	GTNNAC	7 cut(s)	17, 137, 427, 1275, 1339, 1393, 1775
Hpy188I	TCNGA	5 cut(s)	122, 1102, 1200, 1830, 2126
Hpy188III	TCNNGA	9 cut(s)	537, 560, 899, 1211, 1239, 1355, 1934, 1986, 2138
Hpy8I	GTNNAC	7 cut(s)	17, 137, 427, 1275, 1339, 1393, 1775
Hpy99I	CGWCG	1 cut(s)	1779
HpyCH4IV	ACGT	2 cut(s)	2205, 2301
HpyF10VI	GCNNNNNNNGC	7 cut(s)	694, 742, 875, 884, 1074, 1964, 2046
HpyF3I	CTNAG	5 cut(s)	675, 775, 1948, 2123, 2256
HpySE526I	ACGT	2 cut(s)	2205, 2301
Hsp92I	GRCGYC	1 cut(s)	2205
KpnI	GGTACC	3 cut(s)	627, 1695, 1809
Ksp22I	TGATCA	3 cut(s)	439, 1179, 1930
KspAI	GTTAAC	1 cut(s)	1275
LmnI	GCTCC	3 cut(s)	382, 908, 1955
Lsp1109I	GCAGC	5 cut(s)	1210, 1238, 1702, 1912, 1919
LweI	GCATC	4 cut(s)	361, 1540, 1621, 2101
MabI	ACCWGGT	2 cut(s)	715, 1609
MaeI	CTAG	3 cut(s)	471, 1413, 2163
MaeII	ACGT	2 cut(s)	2205, 2301
MaeIII	GTNAC	9 cut(s)	49, 209, 215, 448, 760, 787, 940, 1916, 2206
MboII	GAAGA	8 cut(s)	51, 251, 814, 981, 1396, 1433, 1521, 2285
MfeI	CAATTG	2 cut(s)	882, 1362
MflI	RGATCY	1 cut(s)	494
MhlI	GDGCHC	3 cut(s)	1518, 1985, 2145
MlsI	TGGCCA	1 cut(s)	2190
MluNI	TGGCCA	1 cut(s)	2190
MlyI	GAGTC	1 cut(s)	1528
MmeI	TCCRAC	3 cut(s)	1063, 1180, 1901
Mox20I	TGGCCA	1 cut(s)	2190
Mph1103I	ATGCAT	2 cut(s)	1066, 1636
MroXI	GAANNNNTTC	1 cut(s)	2049
MscI	TGGCCA	1 cut(s)	2190
MslI	CAYNNNNRTG	4 cut(s)	704, 1598, 1899, 1972
Msp20I	TGGCCA	1 cut(s)	2190
MspA1I	CMGCKG	1 cut(s)	1229
MspI	CCGG	3 cut(s)	367, 1246, 2133
MspR9I	CCNGG	9 cut(s)	105, 323, 368, 574, 717, 1611, 2103, 2187, 2192
MunI	CAATTG	2 cut(s)	882, 1362
Mva1269I	GAATGC	4 cut(s)	503, 1824, 2049, 2289
MvaI	CCWGG	8 cut(s)	105, 323, 574, 717, 1611, 2103, 2187, 2192
MwoI	GCNNNNNNNGC	7 cut(s)	694, 742, 875, 884, 1074, 1964, 2046
NciI	CCSGG	1 cut(s)	368
NcoI	CCATGG	3 cut(s)	375, 915, 2281
NdeI	CATATG	1 cut(s)	1477
NlaIV	GGNNCC	6 cut(s)	420, 625, 1693, 1807, 2005, 2119
NmuCI	GTSAC	5 cut(s)	49, 215, 760, 787, 2206
NsiI	ATGCAT	2 cut(s)	1066, 1636
NspI	RCATGY	7 cut(s)	71, 363, 517, 895, 1064, 1068, 2238
NspV	TTCGAA	2 cut(s)	585, 2308
PaeI	GCATGC	2 cut(s)	1064, 1068
PaeR7I	CTCGAG	1 cut(s)	1984
PagI	TCATGA	1 cut(s)	2137
PciI	ACATGT	1 cut(s)	891
PctI	GAATGC	4 cut(s)	503, 1824, 2049, 2289
PdmI	GAANNNNTTC	1 cut(s)	2049
PfeI	GAWTC	4 cut(s)	629, 998, 1086, 2079
PflMI	CCANNNNNTGG	1 cut(s)	104
PfoI	TCCNGGA	2 cut(s)	321, 366
PinAI	ACCGGT	1 cut(s)	2132
PkrI	GCNGC	7 cut(s)	7, 637, 1225, 1228, 1717, 1909, 1927
PleI	GAGTC	1 cut(s)	1528
PpsI	GAGTC	1 cut(s)	1528
PpuMI	RGGWCCY	1 cut(s)	1613
PscI	ACATGT	1 cut(s)	891
PshBI	ATTAAT	2 cut(s)	1185, 1344
PsiI	TTATAA	1 cut(s)	2030
Psp124BI	GAGCTC	2 cut(s)	1518, 1985
Psp5II	RGGWCCY	1 cut(s)	1613
Psp6I	CCWGG	8 cut(s)	103, 321, 572, 715, 1609, 2101, 2185, 2190
PspGI	CCWGG	8 cut(s)	103, 321, 572, 715, 1609, 2101, 2185, 2190
PspN4I	GGNNCC	6 cut(s)	420, 625, 1693, 1807, 2005, 2119
PspPI	GGNCC	4 cut(s)	876, 1613, 1856, 2004
PspPPI	RGGWCCY	1 cut(s)	1613
PstI	CTGCAG	1 cut(s)	1228
PsuI	RGATCY	1 cut(s)	494
PvuII	CAGCTG	1 cut(s)	1229
RsaI	GTAC	8 cut(s)	339, 525, 625, 1394, 1693, 1800, 1807, 1964
RsaNI	GTAC	8 cut(s)	338, 524, 624, 1393, 1692, 1799, 1806, 1963
RseI	CAYNNNNRTG	4 cut(s)	704, 1598, 1899, 1972
SacI	GAGCTC	2 cut(s)	1518, 1985
SalI	GTCGAC	1 cut(s)	1773
SatI	GCNGC	7 cut(s)	6, 636, 1224, 1227, 1716, 1908, 1926
Sau96I	GGNCC	4 cut(s)	876, 1613, 1856, 2004
SchI	GAGTC	1 cut(s)	1528
ScrFI	CCNGG	9 cut(s)	105, 323, 368, 574, 717, 1611, 2103, 2187, 2192
SduI	GDGCHC	3 cut(s)	1518, 1985, 2145
SexAI	ACCWGGT	2 cut(s)	715, 1609
SfaNI	GCATC	4 cut(s)	361, 1540, 1621, 2101
SfcI	CTRYAG	4 cut(s)	423, 658, 930, 1224
Sfr274I	CTCGAG	1 cut(s)	1984
SfuI	TTCGAA	2 cut(s)	585, 2308
SinI	GGWCC	3 cut(s)	1613, 1856, 2004
SlaI	CTCGAG	1 cut(s)	1984
SmiMI	CAYNNNNRTG	4 cut(s)	704, 1598, 1899, 1972
SmlI	CTYRAG	2 cut(s)	1006, 1984
SmoI	CTYRAG	2 cut(s)	1006, 1984
SphI	GCATGC	2 cut(s)	1064, 1068
SsiI	CCGC	4 cut(s)	6, 636, 649, 1822
SspI	AATATT	1 cut(s)	84
SspMI	CTAG	3 cut(s)	471, 1413, 2163
SstI	GAGCTC	2 cut(s)	1518, 1985
StyD4I	CCNGG	9 cut(s)	103, 321, 366, 572, 715, 1609, 2101, 2185, 2190
StyI	CCWWGG	5 cut(s)	234, 375, 915, 1999, 2281
TaiI	ACGT	2 cut(s)	2208, 2304
TaqI	TCGA	9 cut(s)	585, 831, 1029, 1350, 1532, 1559, 1774, 1985, 2308
TaqII	GACCGA	1 cut(s)	1844
TatI	WGTACW	1 cut(s)	1392
TauI	GCSGC	2 cut(s)	8, 638
TfiI	GAWTC	4 cut(s)	629, 998, 1086, 2079
TscAI	CASTG	4 cut(s)	16, 337, 351, 769
TseFI	GTSAC	5 cut(s)	49, 215, 760, 787, 2206
TseI	GCWGC	5 cut(s)	1223, 1226, 1715, 1907, 1925
Tsp45I	GTSAC	5 cut(s)	49, 215, 760, 787, 2206
TspDTI	ATGAA	7 cut(s)	1015, 1061, 1140, 1434, 1883, 1917, 2042
TspGWI	ACGGA	3 cut(s)	197, 1718, 2234
TspRI	CASTG	4 cut(s)	16, 337, 351, 769
Van91I	CCANNNNNTGG	1 cut(s)	104
VpaK11BI	GGWCC	3 cut(s)	1613, 1856, 2004
VspI	ATTAAT	2 cut(s)	1185, 1344
XapI	RAATTY	3 cut(s)	116, 125, 597
XceI	RCATGY	7 cut(s)	71, 363, 517, 895, 1064, 1068, 2238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XhoI	CTCGAG	1 cut(s)	1984
XmiI	GTMKAC	4 cut(s)	16, 136, 426, 1774
XmnI	GAANNNNTTC	1 cut(s)	2049
XspI	CTAG	3 cut(s)	471, 1413, 2163
ZraI	GACGTC	1 cut(s)	2206
Zsp2I	ATGCAT	2 cut(s)	1066, 1636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.