Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

35237380 .. 35237598

Gene Structure 219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGCCCCTGAAGCAAGCGAAATTCAATATACCTGTAACGAACAAATTTGCTAAAGTGATTGATTTTTTAAGGAGGCAACTTCACCGGGATACGTTGTTTGCGTATGTCAACAGTGCATTCTCTCCAAACCCAAATAAATTGGTTATGAATCTGTATAATAATTTTGGTTTTGATGGTAGACTGACGGTCAATTATGCTTATACCATGGCATGGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0016740 GO:0018410 GO:0019538 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043412 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071704 GO:0071840 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04138 ko04140 ko04621 ko04622 map04068 map04136 map04138 map04140 map04621 map04622

Pfam Domains

Protein Families

APG12

Protein Analysis

72

Amino Acids

8.39

Weight (kDa)

10.09

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APG12	PF04110	3 - 72	2.5e-23	Ubiquitin-like autophagy protein Apg12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	210
AccI	GTMKAC	1 cut(s)	178
AcsI	RAATTY	2 cut(s)	20, 44
AcuI	CTGAAG	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	1 cut(s)	25
AhdI	GACNNNNNGTC	1 cut(s)	185
ApoI	RAATTY	2 cut(s)	20, 44
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	74
BccI	CCATC	1 cut(s)	167
BciVI	GTATCC	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	86
BfuI	GTATCC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	86
BmeRI	GACNNNNNGTC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	116
Bsp19I	CCATGG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	113, 187
BstC8I	GCNNGC	1 cut(s)	15
BstDSI	CCRYGG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	82
BtgI	CCRYGG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	15
CviAII	CATG	2 cut(s)	205, 210
CviJI	RGCY	1 cut(s)	216
CviKI_1	RGCY	1 cut(s)	216
DriI	GACNNNNNGTC	1 cut(s)	185
Eam1105I	GACNNNNNGTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	2 cut(s)	208, 213
FaiI	YATR	8 cut(s)	29, 105, 146, 156, 195, 201, 206, 211
FatI	CATG	2 cut(s)	204, 209
FblI	GTMKAC	1 cut(s)	178
HapII	CCGG	1 cut(s)	85
Hin1II	CATG	2 cut(s)	208, 213
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	2 cut(s)	109, 179
Hpy8I	GTNNAC	2 cut(s)	109, 179
HpyCH4III	ACNGT	2 cut(s)	113, 187
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpySE526I	ACGT	1 cut(s)	92
Hsp92II	CATG	2 cut(s)	208, 213
LpnPI	CCDG	3 cut(s)	20, 45, 98
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	34
MluCI	AATT	5 cut(s)	20, 44, 137, 160, 190
MnlI	CCTC	1 cut(s)	66
MseI	TTAA	1 cut(s)	68
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	10
NciI	CCSGG	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	204
NlaIII	CATG	2 cut(s)	208, 213
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PctI	GAATGC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	148
PflMI	CCANNNNNTGG	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	86
SetI	ASST	2 cut(s)	34, 95
SgeI	CNNG	5 cut(s)	19, 26, 44, 97, 98
Sse9I	AATT	5 cut(s)	20, 44, 137, 160, 190
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	113, 187
TaiI	ACGT	1 cut(s)	95
TasI	AATT	5 cut(s)	20, 44, 137, 160, 190
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	118
Van91I	CCANNNNNTGG	1 cut(s)	210
XapI	RAATTY	2 cut(s)	20, 44
XmiI	GTMKAC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.