RchiOBHm_Chr5g0042011

Rab subfamily of small GTPases

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
36906304 .. 36907735
1432 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 258 bp
ATGAGTTCTGCTTGGAGTCCAAGTCCACCATCGGCGTCGAATTCGCCACCAGAACTCTTCAGGTGCCTAGTGGTTGAAGGAAAAACTGTCAAGGCACAGATCTGGGATACAGCAGGGCAGGAGCGATATCGTGCTATCACCAATGCATGCGATAGAGGGGCAGTGGGTGTGTTAAAACAACTAATGCACGTTGAATTTTCTAGATCTTTCTCTAGCTATCTAGATCATGTGTCTAGAACATGTCTAAGTCTAGAATAA

Protein Analysis

85

Amino Acids

9.39

Weight (kDa)

7.75

Isoelectric Point (pI)

67.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 23 - 71 1e-09 Ras family
Roc PF08477 27 - 62 6e-06 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 63
AcsI RAATTY 2 cut(s) 40, 194
AcuI CTGAAG 1 cut(s) 43
AcyI GRCGYC 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 239
AgsI TTSAA 2 cut(s) 77, 194
AluBI AGCT 1 cut(s) 216
AluI AGCT 1 cut(s) 216
ApoI RAATTY 2 cut(s) 40, 194
AsuHPI GGTGA 1 cut(s) 130
BanI GGYRCC 1 cut(s) 63
BccI CCATC 1 cut(s) 37
BciVI GTATCC 1 cut(s) 100
BfaI CTAG 6 cut(s) 68, 201, 213, 221, 234, 251
BfuI GTATCC 1 cut(s) 100
BglII AGATCT 2 cut(s) 99, 203
BmiI GGNNCC 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
BshNI GGYRCC 1 cut(s) 63
Bsp143I GATC 3 cut(s) 99, 203, 223
BspLI GGNNCC 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 63
BssMI GATC 3 cut(s) 99, 203, 223
BssNI GRCGYC 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 1 cut(s) 245
BstKTI GATC 3 cut(s) 102, 206, 226
BstMBI GATC 3 cut(s) 99, 203, 223
BstNSI RCATGY 2 cut(s) 150, 243
BstX2I RGATCY 2 cut(s) 99, 203
BstYI RGATCY 2 cut(s) 99, 203
BsuI GTATCC 1 cut(s) 100
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 148
CseI GACGC 1 cut(s) 24
CviAII CATG 3 cut(s) 147, 227, 240
CviJI RGCY 1 cut(s) 216
CviKI_1 RGCY 1 cut(s) 216
DdeI CTNAG 1 cut(s) 245
DpnI GATC 3 cut(s) 101, 205, 225
DpnII GATC 3 cut(s) 99, 203, 223
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco32I GATATC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 43
EcoRI GAATTC 1 cut(s) 40
EcoRV GATATC 1 cut(s) 128
EcoT22I ATGCAT 1 cut(s) 148
FaeI CATG 3 cut(s) 150, 230, 243
FaiI YATR 3 cut(s) 148, 228, 241
FatI CATG 3 cut(s) 146, 226, 239
FspBI CTAG 6 cut(s) 68, 201, 213, 221, 234, 251
HgaI GACGC 1 cut(s) 24
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 3 cut(s) 150, 230, 243
HinfI GANTC 1 cut(s) 16
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 26
Hpy188III TCNNGA 4 cut(s) 201, 221, 234, 251
Hpy8I GTNNAC 1 cut(s) 26
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 2 cut(s) 146, 187
HpyF3I CTNAG 1 cut(s) 245
HpySE526I ACGT 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 3 cut(s) 150, 230, 243
Kzo9I GATC 3 cut(s) 99, 203, 223
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 5 cut(s) 46, 63, 88, 99, 104
MaeI CTAG 6 cut(s) 68, 201, 213, 221, 234, 251
MaeII ACGT 1 cut(s) 189
MalI GATC 3 cut(s) 101, 205, 225
MboI GATC 3 cut(s) 99, 203, 223
MboII GAAGA 1 cut(s) 49
MflI RGATCY 2 cut(s) 99, 203
MluCI AATT 2 cut(s) 40, 194
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 1 cut(s) 149
Mph1103I ATGCAT 1 cut(s) 148
MseI TTAA 1 cut(s) 173
NdeII GATC 3 cut(s) 99, 203, 223
NlaIII CATG 3 cut(s) 150, 230, 243
NlaIV GGNNCC 1 cut(s) 65
NsiI ATGCAT 1 cut(s) 148
NspI RCATGY 2 cut(s) 150, 243
PaeI GCATGC 1 cut(s) 150
PciI ACATGT 1 cut(s) 239
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PscI ACATGT 1 cut(s) 239
PspN4I GGNNCC 1 cut(s) 65
PsuI RGATCY 2 cut(s) 99, 203
SaqAI TTAA 1 cut(s) 173
Sau3AI GATC 3 cut(s) 99, 203, 223
SchI GAGTC 1 cut(s) 25
SetI ASST 3 cut(s) 65, 192, 218
SphI GCATGC 1 cut(s) 150
Sse9I AATT 2 cut(s) 40, 194
SspMI CTAG 6 cut(s) 68, 201, 213, 221, 234, 251
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 1 cut(s) 192
TaqI TCGA 1 cut(s) 38
TasI AATT 2 cut(s) 40, 194
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TscAI CASTG 1 cut(s) 168
TspRI CASTG 1 cut(s) 168
XapI RAATTY 2 cut(s) 40, 194
XbaI TCTAGA 4 cut(s) 200, 220, 233, 250
XceI RCATGY 2 cut(s) 150, 243
XspI CTAG 6 cut(s) 68, 201, 213, 221, 234, 251
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.