Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

36965786 .. 36966307

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGAGCAACGTGCCTAAAGAAGCAATTGAGGTCGTAGCACAGAGCATTGGCATTACCAATTTGTCTCCTGATGTTGCACTTGCTCTCACCCCAGATATCGAGTACCGGATTCGCGAGATCATGCAGGTATGCCCATGTTGTTGTGGTTATATGATAAGTTTTTGTTTCTTAATTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000124 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0051276 GO:0055029 GO:0061695 GO:0070013 GO:0070461 GO:0071704 GO:0071840 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902493 GO:1902494 GO:1905368 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TAF TAF6_C

Protein Analysis

59

Amino Acids

6.52

Weight (kDa)

4.36

Isoelectric Point (pI)

52.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAF	PF02969	1 - 42	2.3e-16	TATA box binding protein associated factor (TAF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	115
AccII	CGCG	1 cut(s)	114
AfaI	GTAC	1 cut(s)	104
Alw26I	GTCTC	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	115
BsaWI	WCCGGW	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	117
Bsp68I	TCGCGA	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	114
BspMI	ACCTGC	1 cut(s)	115
BssMI	GATC	1 cut(s)	117
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	1 cut(s)	120
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	117
BstUI	CGCG	1 cut(s)	114
BtuMI	TCGCGA	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	2 cut(s)	121, 135
CviQI	GTAC	1 cut(s)	103
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	97
EcoRV	GATATC	1 cut(s)	97
FaeI	CATG	2 cut(s)	124, 138
FaiI	YATR	5 cut(s)	122, 130, 136, 150, 152
FatI	CATG	2 cut(s)	120, 134
HapII	CCGG	1 cut(s)	106
Hin1II	CATG	2 cut(s)	124, 138
HinfI	GANTC	1 cut(s)	109
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	1 cut(s)	79
Hpy188III	TCNNGA	2 cut(s)	68, 113
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	2 cut(s)	77, 124
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	2 cut(s)	124, 138
Kzo9I	GATC	1 cut(s)	117
LpnPI	CCDG	4 cut(s)	81, 105, 110, 119
MaeII	ACGT	1 cut(s)	9
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MfeI	CAATTG	1 cut(s)	24
MluCI	AATT	3 cut(s)	24, 58, 171
MnlI	CCTC	1 cut(s)	22
MseI	TTAA	1 cut(s)	170
MspI	CCGG	1 cut(s)	106
MunI	CAATTG	1 cut(s)	24
MvnI	CGCG	1 cut(s)	114
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	2 cut(s)	124, 138
NruI	TCGCGA	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	109
RruI	TCGCGA	1 cut(s)	114
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	170
Sau3AI	GATC	1 cut(s)	117
SetI	ASST	3 cut(s)	12, 33, 129
Sse9I	AATT	3 cut(s)	24, 58, 171
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	99
TasI	AATT	3 cut(s)	24, 58, 171
TfiI	GAWTC	1 cut(s)	109
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.