Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

37822489 .. 37822821

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGATGCTCGAGCATGTACTTGTTTTGAGTGCCTACTTATTTTCTATCGGTATCTATGGATTGATCACGAGCCGAAATATGGTTAGAGCCCTTATGTGTCTTGAACTTATACTGAATGCGGTTAATATAAATTTCGTAACATTTTCTGATTTTTTTGATAGCCGGCAATTAAAAGGAAATATTTTCTCCATTTTTGTTATAGCTATTGCCGTCGCTGAAGCAGCTATTGGACCGGCTATTGTTTCGTCAATTTATCGTAACAGAAAATCAACTCGTATCAATCAATCGAATTTGTTGAATAGCTTGTCAGCTAAAGCATTCCCTTCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008137 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0030964 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042180 GO:0042181 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050136 GO:0051186 GO:0051188 GO:0055035 GO:0055114 GO:0071704 GO:0098796 GO:1901576 GO:1901661 GO:1901663 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 map00190 map01100

Pfam Domains

Protein Families

Oxidored_q2

Protein Analysis

110

Amino Acids

12.16

Weight (kDa)

9.74

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_q2	PF00420	5 - 100	1.1e-28	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	119
AcsI	RAATTY	2 cut(s)	130, 289
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	104, 298
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AluBI	AGCT	4 cut(s)	203, 224, 303, 311
AluI	AGCT	4 cut(s)	203, 224, 303, 311
Ama87I	CYCGRG	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	2 cut(s)	130, 289
AspS9I	GGNCC	1 cut(s)	230
AvaI	CYCGRG	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	91
BauI	CACGAG	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	194
BclI	TGATCA	1 cut(s)	63
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	230
BmeT110I	CYCGRG	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse118I	RCCGGY	2 cut(s)	162, 232
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	233
BsiHKCI	CYCGRG	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	163, 233
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmI	GAATGC	2 cut(s)	121, 317
BsoBI	CYCGRG	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	1 cut(s)	119
BsrFI	RCCGGY	2 cut(s)	162, 232
BssAI	RCCGGY	2 cut(s)	162, 232
BssMI	GATC	1 cut(s)	63
BssSI	CACGAG	1 cut(s)	67
Bst2BI	CACGAG	1 cut(s)	67
BstC8I	GCNNGC	1 cut(s)	164
BstKTI	GATC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	17
BstV1I	GCAGC	1 cut(s)	233
Cac8I	GCNNGC	1 cut(s)	164
Cfr10I	RCCGGY	2 cut(s)	162, 232
Cfr13I	GGNCC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	8 cut(s)	72, 89, 162, 203, 224, 236, 303, 311
CviKI_1	RGCY	8 cut(s)	72, 89, 162, 203, 224, 236, 303, 311
CviQI	GTAC	1 cut(s)	17
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	8
EcoT38I	GRGCYC	1 cut(s)	91
FaeI	CATG	1 cut(s)	17
FaiI	YATR	7 cut(s)	15, 57, 80, 95, 110, 128, 200
FatI	CATG	1 cut(s)	13
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	222
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	1 cut(s)	222
GluI	GCNGC	1 cut(s)	222
HapII	CCGG	2 cut(s)	163, 233
Hin1II	CATG	1 cut(s)	17
HpaII	CCGG	2 cut(s)	163, 233
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	2 cut(s)	67, 101
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	333
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
Hsp92II	CATG	1 cut(s)	17
KroI	GCCGGC	1 cut(s)	162
KroNI	GCCGGC	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	63
LpnPI	CCDG	2 cut(s)	176, 246
Lsp1109I	GCAGC	1 cut(s)	233
MaeIII	GTNAC	2 cut(s)	136, 257
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	4 cut(s)	130, 167, 249, 289
MroNI	GCCGGC	1 cut(s)	162
MseI	TTAA	2 cut(s)	123, 170
MspI	CCGG	2 cut(s)	163, 233
Mva1269I	GAATGC	2 cut(s)	121, 317
MwoI	GCNNNNNNNGC	1 cut(s)	221
NaeI	GCCGGC	1 cut(s)	164
NdeII	GATC	1 cut(s)	63
NgoMIV	GCCGGC	1 cut(s)	162
NlaIII	CATG	1 cut(s)	17
NspI	RCATGY	1 cut(s)	17
PaeR7I	CTCGAG	1 cut(s)	8
PctI	GAATGC	2 cut(s)	121, 317
PdiI	GCCGGC	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	230
PspXI	VCTCGAGB	1 cut(s)	8
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	123, 170
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	4 cut(s)	205, 226, 305, 313
Sfr274I	CTCGAG	1 cut(s)	8
SinI	GGWCC	1 cut(s)	230
SlaI	CTCGAG	1 cut(s)	8
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	4 cut(s)	130, 167, 249, 289
SsiI	CCGC	1 cut(s)	119
SspI	AATATT	1 cut(s)	181
TaqI	TCGA	2 cut(s)	9, 287
TasI	AATT	4 cut(s)	130, 167, 249, 289
TatI	WGTACW	1 cut(s)	16
Tru1I	TTAA	2 cut(s)	123, 170
Tru9I	TTAA	2 cut(s)	123, 170
TseI	GCWGC	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	2 cut(s)	130, 289
XceI	RCATGY	1 cut(s)	17
XhoI	CTCGAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.