RchiOBHm_Chr5g0043201

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
38151921 .. 38152303
383 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 246 bp
ATGCAATTGAAGAACAACATACAACAATTTTTCCGCAGCAAAGCGCGGGCATGTTTTCTAGTTATATTGAATGCTTGGGCAATCGGAAGAGATCCCAATTACTGGACTGAGCCCGAGACCTTTTATCCAGAGAGATTCCTTGATAGTTCTTTTGACTACCACGGAACAAACTTTGAGTATATCCCATTTGGTGCTGGAAGGAGATCGAATTTGCCCTGCCATATTATACAGCCTGGCAAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

81

Amino Acids

9.53

Weight (kDa)

8.55

Isoelectric Point (pI)

66.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 20 - 69 2.1e-15 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 102
AccII CGCG 1 cut(s) 46
AciI CCGC 2 cut(s) 34, 46
AclWI GGATC 1 cut(s) 86
AcsI RAATTY 1 cut(s) 208
AfiI CCNNNNNNNGG 1 cut(s) 102
AgsI TTSAA 2 cut(s) 10, 70
AjnI CCWGG 1 cut(s) 232
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 1 cut(s) 86
Ama87I CYCGRG 1 cut(s) 113
ApeKI GCWGC 1 cut(s) 36
ApoI RAATTY 1 cut(s) 208
AspLEI GCGC 1 cut(s) 46
AvaI CYCGRG 1 cut(s) 113
BanII GRGCYC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 48
BciT130I CCWGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 234
BmeT110I CYCGRG 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 107
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 102
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 107
BseXI GCAGC 1 cut(s) 48
Bsh1236I CGCG 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 110
BsmI GAATGC 1 cut(s) 76
Bso31I GGTCTC 1 cut(s) 110
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 2 cut(s) 91, 203
BspACI CCGC 2 cut(s) 34, 46
BspCNI CTCAG 1 cut(s) 100
BspFNI CGCG 1 cut(s) 46
BspPI GGATC 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 110
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 2 cut(s) 91, 203
Bst2UI CCWGG 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 1 cut(s) 108
BstDSI CCRYGG 1 cut(s) 160
BstFNI CGCG 1 cut(s) 46
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 2 cut(s) 94, 206
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 2 cut(s) 91, 203
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 232
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BtgI CCRYGG 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 48
CfoI GCGC 1 cut(s) 46
CviAII CATG 1 cut(s) 51
CviJI RGCY 2 cut(s) 112, 232
CviKI_1 RGCY 2 cut(s) 112, 232
DdeI CTNAG 1 cut(s) 108
DpnI GATC 2 cut(s) 93, 205
DpnII GATC 2 cut(s) 91, 203
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
Eco24I GRGCYC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 114
FaeI CATG 1 cut(s) 54
FaiI YATR 6 cut(s) 20, 52, 65, 180, 222, 227
FatI CATG 1 cut(s) 50
FauI CCCGC 1 cut(s) 39
Fnu4HI GCNGC 1 cut(s) 37
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 37
FspBI CTAG 1 cut(s) 59
GlaI GCGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 37
HhaI GCGC 1 cut(s) 46
Hin1II CATG 1 cut(s) 54
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HinfI GANTC 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 192
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 1 cut(s) 54
HspAI GCGC 1 cut(s) 44
Kzo9I GATC 2 cut(s) 91, 203
LpnPI CCDG 5 cut(s) 88, 141, 180, 219, 229
Lsp1109I GCAGC 1 cut(s) 48
MaeI CTAG 1 cut(s) 59
MalI GATC 2 cut(s) 93, 205
MboI GATC 2 cut(s) 91, 203
MboII GAAGA 2 cut(s) 22, 99
MfeI CAATTG 1 cut(s) 5
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 4 cut(s) 5, 26, 97, 208
MspR9I CCNGG 1 cut(s) 234
MunI CAATTG 1 cut(s) 5
Mva1269I GAATGC 1 cut(s) 76
MvaI CCWGG 1 cut(s) 234
MvnI CGCG 1 cut(s) 46
NdeII GATC 2 cut(s) 91, 203
NlaIII CATG 1 cut(s) 54
NspI RCATGY 1 cut(s) 54
PctI GAATGC 1 cut(s) 76
PfeI GAWTC 1 cut(s) 135
PflMI CCANNNNNTGG 1 cut(s) 102
PkrI GCNGC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PsuI RGATCY 1 cut(s) 91
SatI GCNGC 1 cut(s) 37
Sau3AI GATC 2 cut(s) 91, 203
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 114
SetI ASST 1 cut(s) 122
Sse9I AATT 4 cut(s) 5, 26, 97, 208
SsiI CCGC 2 cut(s) 34, 46
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 232
TaqI TCGA 1 cut(s) 206
TasI AATT 4 cut(s) 5, 26, 97, 208
TfiI GAWTC 1 cut(s) 135
TseI GCWGC 1 cut(s) 36
TspGWI ACGGA 1 cut(s) 177
Van91I CCANNNNNTGG 1 cut(s) 102
XapI RAATTY 1 cut(s) 208
XceI RCATGY 1 cut(s) 54
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.