RchiOBHm_Chr5g0043761

Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
38787061 .. 38787324
264 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 138 bp
ATGTTCCCTGCAAGTCCTTATGGTTTTATAAGTTTCAAGAATAACACTCCAAAGCGAGACTTGATCGACTCATCTGTTTTGAGGAACATGGATTTAGGATTAGGGCATTCTCTTCTTGCCTACAAAAGCAGACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

45

Amino Acids

5.07

Weight (kDa)

9.82

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ASL_C PF08328 18 - 43 3.8e-06 Adenylosuccinate lyase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 29
AgsI TTSAA 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 51
BsmI GAATGC 1 cut(s) 106
Bsp143I GATC 1 cut(s) 63
BssMI GATC 1 cut(s) 63
Bst6I CTCTTC 1 cut(s) 117
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 1 cut(s) 63
CviAII CATG 1 cut(s) 88
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
FaeI CATG 1 cut(s) 91
FaiI YATR 3 cut(s) 21, 29, 89
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FatI CATG 1 cut(s) 87
Hin1II CATG 1 cut(s) 91
HinfI GANTC 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 11
Hsp92II CATG 1 cut(s) 91
Kzo9I GATC 1 cut(s) 63
LpnPI CCDG 1 cut(s) 21
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 1 cut(s) 104
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 106
NdeII GATC 1 cut(s) 63
NlaIII CATG 1 cut(s) 91
PctI GAATGC 1 cut(s) 106
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
PsiI TTATAA 1 cut(s) 29
Sau3AI GATC 1 cut(s) 63
SchI GAGTC 1 cut(s) 62
SgeI CNNG 7 cut(s) 20, 24, 49, 68, 73, 100, 128
TaqI TCGA 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.