RchiOBHm_Chr5g0044971

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
40498736 .. 40499449
714 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 231 bp
ATGAGTCGTGCCAGTATGCCATCATGTGGAGGCTGCACTAAAGTCACTCCATTCGTTGTTGTGGAACGTACAAAGTTGCGGCCAATTGCGAGTGGTCTTTTGACACCTTTTAAAGGGTTGTGTTTTCTCGGATTTCAATTGCTTTTGGGTCTTGGAATTCTCCTCCAACTGAATAATTATAGGTTAGTACCTCACTTTTGGGTCTTGGAATTGCTCACTTTTAATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

76

Amino Acids

8.45

Weight (kDa)

9.75

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 21 - 62 1.1e-06 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 26
AciI CCGC 1 cut(s) 79
AcoI YGGCCR 1 cut(s) 80
AcsI RAATTY 1 cut(s) 156
AfaI GTAC 2 cut(s) 70, 189
AfiI CCNNNNNNNGG 2 cut(s) 26, 113
AgsI TTSAA 1 cut(s) 137
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 33
ApoI RAATTY 1 cut(s) 156
BbvI GCAGC 1 cut(s) 20
BccI CCATC 1 cut(s) 28
BisI GCNGC 2 cut(s) 34, 80
BlsI GCNGC 2 cut(s) 35, 81
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 113
Bse1I ACTGG 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 26, 113
BseNI ACTGG 1 cut(s) 12
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 20
BsgI GTGCAG 1 cut(s) 19
BshFI GGCC 1 cut(s) 82
BslI CCNNNNNNNGG 2 cut(s) 26, 113
BsnI GGCC 1 cut(s) 82
BspACI CCGC 1 cut(s) 79
BspANI GGCC 1 cut(s) 82
BsrI ACTGG 1 cut(s) 12
BstENI CCTNNNNNAGG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 20
BsuRI GGCC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 69, 188
CviAII CATG 1 cut(s) 24
CviJI RGCY 2 cut(s) 33, 82
CviKI_1 RGCY 2 cut(s) 33, 82
CviQI GTAC 2 cut(s) 69, 188
DraI TTTAAA 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 80
EcoNI CCTNNNNNAGG 1 cut(s) 111
EcoRI GAATTC 1 cut(s) 156
FaeI CATG 1 cut(s) 27
FaiI YATR 3 cut(s) 17, 25, 180
FatI CATG 1 cut(s) 23
Fnu4HI GCNGC 2 cut(s) 34, 80
Fsp4HI GCNGC 2 cut(s) 34, 80
GluI GCNGC 2 cut(s) 34, 80
HaeIII GGCC 1 cut(s) 82
Hin1II CATG 1 cut(s) 27
HinfI GANTC 1 cut(s) 4
Hpy188I TCNGA 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 36
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 1 cut(s) 27
LpnPI CCDG 1 cut(s) 25
Lsp1109I GCAGC 1 cut(s) 20
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 43
MfeI CAATTG 2 cut(s) 84, 137
MluCI AATT 5 cut(s) 84, 137, 156, 175, 209
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 3 cut(s) 23, 173, 201
MseI TTAA 3 cut(s) 111, 222, 229
MunI CAATTG 2 cut(s) 84, 137
NlaIII CATG 1 cut(s) 27
NmuCI GTSAC 1 cut(s) 43
PflMI CCANNNNNTGG 1 cut(s) 26
PkrI GCNGC 2 cut(s) 35, 81
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
RsaI GTAC 2 cut(s) 70, 189
RsaNI GTAC 2 cut(s) 69, 188
SaqAI TTAA 3 cut(s) 111, 222, 229
SatI GCNGC 2 cut(s) 34, 80
SchI GAGTC 1 cut(s) 13
SetI ASST 4 cut(s) 70, 109, 185, 193
SgeI CNNG 7 cut(s) 20, 24, 36, 102, 140, 164, 217
Sse9I AATT 5 cut(s) 84, 137, 156, 175, 209
SsiI CCGC 1 cut(s) 79
TaiI ACGT 1 cut(s) 70
TasI AATT 5 cut(s) 84, 137, 156, 175, 209
TauI GCSGC 1 cut(s) 82
Tru1I TTAA 3 cut(s) 111, 222, 229
Tru9I TTAA 3 cut(s) 111, 222, 229
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 1 cut(s) 33
Tsp45I GTSAC 1 cut(s) 43
Van91I CCANNNNNTGG 1 cut(s) 26
XagI CCTNNNNNAGG 1 cut(s) 111
XapI RAATTY 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.