RchiOBHm_Chr5g0045001

in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
40540530 .. 40545616
5087 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 441 bp
ATGGCTGAGAACCAAGGAAACAAAATCTATGGTTCTGATATCCCAAATCTGAACAAAGTATGTATTGTTAACGTAAAAACCTTTTCTCAAAGAAAAAAGAACAAAAAGCAAGTGGATACTCTTCTAGCAAAGATAAATATATCCATGATACAATCTTATTCGGATTTTTTTAGTTTCATTTTGAGGAAATGTGATGATCTGTGGCCAATAGAAGGTCATGAATTTATCAATTTTACACTTCACTATATTGCTGACTTGGACATACCGATAAAGAGCCAAGAGGAAAGAGATGAATTTGAAAGATATGACAAGGTTCACAACGTACGCCTGAAAATGGTTTCTATCCTTCGTGAGAAGTTTGCTCACTTTAACCTAACATTTTCCATTGGAGGACAGATAAGCTTTGATGTAAGTGACTTGATATTCATTTATGCTTGGTAG

Protein Analysis

146

Amino Acids

17.19

Weight (kDa)

6.9

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMM PF03332 55 - 137 2.3e-17 Eukaryotic phosphomannomutase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 203
AcsI RAATTY 2 cut(s) 221, 293
AfaI GTAC 1 cut(s) 324
AfiI CCNNNNNNNGG 2 cut(s) 212, 334
AgsI TTSAA 1 cut(s) 299
AluBI AGCT 1 cut(s) 402
AluI AGCT 1 cut(s) 402
AoxI GGCC 1 cut(s) 203
ApoI RAATTY 2 cut(s) 221, 293
BalI TGGCCA 1 cut(s) 205
BciVI GTATCC 1 cut(s) 109
BfaI CTAG 1 cut(s) 125
BfuI GTATCC 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 13
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 334
BseDI CCNNGG 1 cut(s) 13
BseLI CCNNNNNNNGG 2 cut(s) 212, 334
BshFI GGCC 1 cut(s) 205
BsiWI CGTACG 1 cut(s) 322
BslI CCNNNNNNNGG 2 cut(s) 212, 334
BsnI GGCC 1 cut(s) 205
Bsp143I GATC 1 cut(s) 196
BspANI GGCC 1 cut(s) 205
BspHI TCATGA 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 1 cut(s) 196
BssT1I CCWWGG 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 6
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 1 cut(s) 205
CciI TCATGA 1 cut(s) 217
Csp6I GTAC 1 cut(s) 323
CviAII CATG 2 cut(s) 145, 218
CviJI RGCY 4 cut(s) 5, 205, 276, 402
CviKI_1 RGCY 4 cut(s) 5, 205, 276, 402
CviQI GTAC 1 cut(s) 323
DdeI CTNAG 1 cut(s) 6
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 203
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 13
Eco32I GATATC 1 cut(s) 40
EcoRV GATATC 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 2 cut(s) 148, 221
FaiI YATR 9 cut(s) 30, 61, 140, 146, 219, 246, 263, 306, 432
FatI CATG 2 cut(s) 144, 217
FspBI CTAG 1 cut(s) 125
HaeIII GGCC 1 cut(s) 205
Hin1II CATG 2 cut(s) 148, 221
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 400
HpaI GTTAAC 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 70, 316
Hpy188I TCNGA 3 cut(s) 37, 51, 163
Hpy188III TCNNGA 2 cut(s) 218, 350
Hpy8I GTNNAC 2 cut(s) 70, 316
HpyAV CCTTC 2 cut(s) 206, 356
HpyCH4IV ACGT 2 cut(s) 72, 321
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 2 cut(s) 72, 321
Hsp92II CATG 2 cut(s) 148, 221
KspAI GTTAAC 1 cut(s) 70
Kzo9I GATC 1 cut(s) 196
LpnPI CCDG 1 cut(s) 341
MaeI CTAG 1 cut(s) 125
MaeII ACGT 2 cut(s) 72, 321
MaeIII GTNAC 1 cut(s) 413
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 1 cut(s) 113
MlsI TGGCCA 1 cut(s) 205
MluCI AATT 3 cut(s) 221, 229, 293
MluNI TGGCCA 1 cut(s) 205
MnlI CCTC 3 cut(s) 177, 274, 383
Mox20I TGGCCA 1 cut(s) 205
MscI TGGCCA 1 cut(s) 205
MseI TTAA 2 cut(s) 69, 369
Msp20I TGGCCA 1 cut(s) 205
NdeII GATC 1 cut(s) 196
NlaIII CATG 2 cut(s) 148, 221
NmuCI GTSAC 1 cut(s) 413
PagI TCATGA 1 cut(s) 217
Pfl23II CGTACG 1 cut(s) 322
PspLI CGTACG 1 cut(s) 322
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
SaqAI TTAA 2 cut(s) 69, 369
Sau3AI GATC 1 cut(s) 196
SetI ASST 7 cut(s) 75, 83, 217, 315, 324, 375, 404
Sse9I AATT 3 cut(s) 221, 229, 293
SspMI CTAG 1 cut(s) 125
StyI CCWWGG 1 cut(s) 13
TaiI ACGT 2 cut(s) 75, 324
TasI AATT 3 cut(s) 221, 229, 293
Tru1I TTAA 2 cut(s) 69, 369
Tru9I TTAA 2 cut(s) 69, 369
TseFI GTSAC 1 cut(s) 413
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 4 cut(s) 166, 234, 306, 415
XapI RAATTY 2 cut(s) 221, 293
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.