Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

44801124 .. 44801438

Gene Structure 315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCCGAGGAAGCTAAATGAAGTTGTTTTGGGTTCTTTGCTAGCAGCTTGTAGAACTAGTGGAAATATCAACTTAGCTGAAAGACTGATGAAGTACCTGTTCGAGTTGGATCCTGGTGTTGATTCGAATTATGTGCTCCTTGCCAACATATATGCAGCAGATGGTAGGTGGGATGGTGCAAACAAGGTTAGAAAAACTATGAAAGACCTCGGAATCCAGAAGGTGCTAGGATTTAGTTCAGTTGAGATTGACTGTGATATTCATGAATTCGTGGTAAATCCCATGTTGATGCAGAGTATATATATTCAACGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

104

Amino Acids

11.71

Weight (kDa)

6.55

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	22 - 82	1.5e-16	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	104, 117
AcsI	RAATTY	1 cut(s)	266
AfaI	GTAC	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	308
AhlI	ACTAGT	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	3 cut(s)	13, 47, 77
AluI	AGCT	3 cut(s)	13, 47, 77
Alw21I	GWGCWC	1 cut(s)	138
AlwI	GGATC	2 cut(s)	104, 117
ApeKI	GCWGC	2 cut(s)	44, 155
ApoI	RAATTY	1 cut(s)	266
AsuII	TTCGAA	1 cut(s)	125
AsuNHI	GCTAGC	1 cut(s)	40
BamHI	GGATCC	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	56, 167
BccI	CCATC	2 cut(s)	155, 167
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciT130I	CCWGG	1 cut(s)	114
BcuI	ACTAGT	1 cut(s)	56
BfaI	CTAG	3 cut(s)	41, 57, 227
BisI	GCNGC	2 cut(s)	45, 156
BlsI	GCNGC	2 cut(s)	46, 157
Bme1390I	CCNGG	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	1 cut(s)	279
BmtI	GCTAGC	1 cut(s)	44
Bpu14I	TTCGAA	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	5, 208
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	5, 208
BseGI	GGATG	1 cut(s)	178
BseXI	GCAGC	2 cut(s)	56, 167
BsiHKAI	GWGCWC	1 cut(s)	138
Bsp119I	TTCGAA	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	109
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	111
BspOI	GCTAGC	1 cut(s)	44
BspPI	GGATC	2 cut(s)	104, 117
BspT104I	TTCGAA	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	5, 208
BssMI	GATC	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	73
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	112
BstV1I	GCAGC	2 cut(s)	56, 167
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	42
CciI	TCATGA	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	2 cut(s)	263, 283
CviJI	RGCY	3 cut(s)	13, 47, 77
CviKI_1	RGCY	3 cut(s)	13, 47, 77
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	112
FaeI	CATG	2 cut(s)	266, 286
FatI	CATG	2 cut(s)	262, 282
Fnu4HI	GCNGC	2 cut(s)	45, 156
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	2 cut(s)	45, 156
FspBI	CTAG	3 cut(s)	41, 57, 227
GluI	GCNGC	2 cut(s)	45, 156
Hin1II	CATG	2 cut(s)	266, 286
HinfI	GANTC	2 cut(s)	122, 213
Hpy188I	TCNGA	1 cut(s)	212
Hpy188III	TCNNGA	2 cut(s)	217, 263
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4V	TGCA	3 cut(s)	155, 179, 292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	73
Hsp92II	CATG	2 cut(s)	266, 286
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	141
LpnPI	CCDG	4 cut(s)	99, 110, 126, 230
Lsp1109I	GCAGC	2 cut(s)	56, 167
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	3 cut(s)	41, 57, 227
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	2 cut(s)	127, 266
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	1 cut(s)	109
NheI	GCTAGC	1 cut(s)	40
NlaIII	CATG	2 cut(s)	266, 286
NlaIV	GGNNCC	1 cut(s)	111
NmeAIII	GCCGAG	1 cut(s)	30
NspV	TTCGAA	1 cut(s)	125
PagI	TCATGA	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	122, 213
PkrI	GCNGC	2 cut(s)	46, 157
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	287
SatI	GCNGC	2 cut(s)	45, 156
Sau3AI	GATC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	8 cut(s)	15, 49, 79, 99, 170, 189, 210, 225
SfaNI	GCATC	1 cut(s)	279
SfuI	TTCGAA	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	287
SpeI	ACTAGT	1 cut(s)	56
Sse9I	AATT	2 cut(s)	127, 266
SspMI	CTAG	3 cut(s)	41, 57, 227
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	254
TaqI	TCGA	2 cut(s)	102, 125
TasI	AATT	2 cut(s)	127, 266
TfiI	GAWTC	2 cut(s)	122, 213
TseI	GCWGC	2 cut(s)	44, 155
TspDTI	ATGAA	5 cut(s)	33, 104, 215, 251, 279
XapI	RAATTY	1 cut(s)	266
XspI	CTAG	3 cut(s)	41, 57, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.