RchiOBHm_Chr5g0049471

Serine-rich protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
47048860 .. 47049177
318 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
ATGTCGGAAATCAGACTCCAGACCACCAGCTTCTCATCTCCGTCGTCTACCTTTTTCAACAACCACCAGGACCACCACACCGACTACCACGACCACCATTCCGCTTCACCGACACACATCAATCTCTACACCTCCAGTGCTCTGTCTCCAGCTTTCCGCTTCTCCATTGAGCACCGTTCCATCTCCCCAAACCGATCCATCACCACTTCCAAGAAGAACGGCCCAATCGCGGCAGCCAGGAAGATGTGTATGTACTCGCTGACGAATCATCCAAGCTTGTTTCGCTGCAGATCTGCCATGACGAACTCGCTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.84

Weight (kDa)

9.78

Isoelectric Point (pI)

75.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 47
AccII CGCG 1 cut(s) 230
AciI CCGC 3 cut(s) 102, 157, 230
AclWI GGATC 1 cut(s) 189
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 1 cut(s) 58
AjnI CCWGG 2 cut(s) 66, 236
AluBI AGCT 3 cut(s) 30, 152, 276
AluI AGCT 3 cut(s) 30, 152, 276
Alw21I GWGCWC 2 cut(s) 142, 174
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 1 cut(s) 189
AoxI GGCC 1 cut(s) 220
ApeKI GCWGC 2 cut(s) 233, 285
AspS9I GGNCC 2 cut(s) 70, 221
AsuHPI GGTGA 2 cut(s) 99, 193
AvaII GGWCC 1 cut(s) 70
Bbv12I GWGCWC 2 cut(s) 142, 174
BbvI GCAGC 2 cut(s) 245, 272
BccI CCATC 2 cut(s) 188, 206
BceAI ACGGC 1 cut(s) 235
BciT130I CCWGG 2 cut(s) 68, 238
BcoDI GTCTC 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 286
BglII AGATCT 1 cut(s) 290
BisI GCNGC 3 cut(s) 231, 234, 286
BlsI GCNGC 3 cut(s) 232, 235, 287
Bme1390I CCNGG 2 cut(s) 68, 238
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 70, 221
BmrFI CCNGG 2 cut(s) 68, 238
BpmI CTGGAG 2 cut(s) 118, 132
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 135
BseBI CCWGG 2 cut(s) 68, 238
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 229
BseNI ACTGG 1 cut(s) 135
BseXI GCAGC 2 cut(s) 245, 272
Bsh1236I CGCG 1 cut(s) 230
BshFI GGCC 1 cut(s) 222
BsiHKAI GWGCWC 2 cut(s) 142, 174
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 150
BsnI GGCC 1 cut(s) 222
Bsp1286I GDGCHC 2 cut(s) 142, 174
Bsp143I GATC 2 cut(s) 194, 290
BspACI CCGC 3 cut(s) 102, 157, 230
BspANI GGCC 1 cut(s) 222
BspFNI CGCG 1 cut(s) 230
BspMAI CTGCAG 1 cut(s) 290
BspPI GGATC 1 cut(s) 189
BsrI ACTGG 1 cut(s) 135
BssMI GATC 2 cut(s) 194, 290
Bst2UI CCWGG 2 cut(s) 68, 238
Bst4CI ACNGT 1 cut(s) 176
BstF5I GGATG 1 cut(s) 268
BstFNI CGCG 1 cut(s) 230
BstKTI GATC 2 cut(s) 197, 293
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 2 cut(s) 194, 290
BstMWI GCNNNNNNNGC 1 cut(s) 282
BstNI CCWGG 2 cut(s) 68, 238
BstSCI CCNGG 2 cut(s) 66, 236
BstSFI CTRYAG 1 cut(s) 286
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 2 cut(s) 245, 272
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
BsuRI GGCC 1 cut(s) 222
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 142
Cfr13I GGNCC 2 cut(s) 70, 221
Csp6I GTAC 1 cut(s) 253
CviAII CATG 1 cut(s) 298
CviJI RGCY 5 cut(s) 30, 152, 222, 236, 276
CviKI_1 RGCY 5 cut(s) 30, 152, 222, 236, 276
CviQI GTAC 1 cut(s) 253
DpnI GATC 2 cut(s) 196, 292
DpnII GATC 2 cut(s) 194, 290
Eco47I GGWCC 1 cut(s) 70
EcoRII CCWGG 2 cut(s) 66, 236
FaeI CATG 1 cut(s) 301
FaiI YATR 2 cut(s) 251, 299
FatI CATG 1 cut(s) 297
FblI GTMKAC 1 cut(s) 47
Fnu4HI GCNGC 3 cut(s) 231, 234, 286
FokI GGATG 1 cut(s) 255
Fsp4HI GCNGC 3 cut(s) 231, 234, 286
GluI GCNGC 3 cut(s) 231, 234, 286
GsuI CTGGAG 2 cut(s) 118, 132
HaeIII GGCC 1 cut(s) 222
Hin1II CATG 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 274
HinfI GANTC 2 cut(s) 15, 265
HphI GGTGA 2 cut(s) 99, 193
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 2 cut(s) 7, 14
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 1 cut(s) 48
Hpy99I CGWCG 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4V TGCA 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 282
Hsp92II CATG 1 cut(s) 301
Kzo9I GATC 2 cut(s) 194, 290
LpnPI CCDG 9 cut(s) 32, 40, 53, 80, 148, 162, 223, 250, 296
Lsp1109I GCAGC 2 cut(s) 245, 272
MalI GATC 2 cut(s) 196, 292
MboI GATC 2 cut(s) 194, 290
MboII GAAGA 2 cut(s) 226, 253
MflI RGATCY 1 cut(s) 290
MhlI GDGCHC 2 cut(s) 142, 174
MlyI GAGTC 1 cut(s) 9
MnlI CCTC 1 cut(s) 142
MspR9I CCNGG 2 cut(s) 68, 238
MvaI CCWGG 2 cut(s) 68, 238
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 282
NdeII GATC 2 cut(s) 194, 290
NlaIII CATG 1 cut(s) 301
PfeI GAWTC 1 cut(s) 265
PkrI GCNGC 3 cut(s) 232, 235, 287
PleI GAGTC 1 cut(s) 9
PpsI GAGTC 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 66, 236
PspGI CCWGG 2 cut(s) 66, 236
PspPI GGNCC 2 cut(s) 70, 221
PstI CTGCAG 1 cut(s) 290
PsuI RGATCY 1 cut(s) 290
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SatI GCNGC 3 cut(s) 231, 234, 286
Sau3AI GATC 2 cut(s) 194, 290
Sau96I GGNCC 2 cut(s) 70, 221
SchI GAGTC 1 cut(s) 9
ScrFI CCNGG 2 cut(s) 68, 238
SduI GDGCHC 2 cut(s) 142, 174
SetI ASST 5 cut(s) 32, 53, 134, 154, 278
SfcI CTRYAG 1 cut(s) 286
SinI GGWCC 1 cut(s) 70
SsiI CCGC 3 cut(s) 102, 157, 230
StyD4I CCNGG 2 cut(s) 66, 236
TaaI ACNGT 1 cut(s) 176
TatI WGTACW 1 cut(s) 252
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 1 cut(s) 265
TscAI CASTG 1 cut(s) 142
TseI GCWGC 2 cut(s) 233, 285
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 70
XmiI GTMKAC 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.