RchiOBHm_Chr5g0050421

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
50676359 .. 50676520
162 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 162 bp
ATGCTAAGACGTTTTCTTTCTTATTTTATTGAATTGTTCCATGGTGTTCTTCTCTATGGACCCCCAGGAACAAGGAAGACATTGCTAGCCAGAGCAATTGCAACCAACATAGATGCTAACTTTCTAAAGGTTTGTTATTCATGTATGTGGCTTTTATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

53

Amino Acids

6.2

Weight (kDa)

9.51

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 16 - 46 1e-07 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 32
AjnI CCWGG 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 59
AsuNHI GCTAGC 1 cut(s) 85
AvaII GGWCC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 66
BfaI CTAG 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 66
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 103
BmtI GCTAGC 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 40, 64
Bse3DI GCAATG 1 cut(s) 80
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 2 cut(s) 40, 64
BseMI GCAATG 1 cut(s) 80
Bsp19I CCATGG 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 61
BspOI GCTAGC 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 80
BssECI CCNNGG 2 cut(s) 40, 64
BssT1I CCWWGG 1 cut(s) 40
Bst2UI CCWGG 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 5
BstDSI CCRYGG 1 cut(s) 40
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 83
BtgI CCRYGG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 87
Cfr13I GGNCC 1 cut(s) 59
CviAII CATG 2 cut(s) 41, 141
CviJI RGCY 2 cut(s) 89, 151
CviKI_1 RGCY 2 cut(s) 89, 151
DdeI CTNAG 1 cut(s) 5
Eco130I CCWWGG 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 2 cut(s) 44, 144
FaiI YATR 6 cut(s) 42, 57, 110, 142, 146, 157
FatI CATG 2 cut(s) 40, 140
FspBI CTAG 1 cut(s) 86
Hin1II CATG 2 cut(s) 44, 144
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 5
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 2 cut(s) 44, 144
LpnPI CCDG 3 cut(s) 51, 78, 103
LweI GCATC 1 cut(s) 103
MaeI CTAG 1 cut(s) 86
MaeII ACGT 1 cut(s) 10
MboII GAAGA 2 cut(s) 41, 88
MfeI CAATTG 1 cut(s) 96
MluCI AATT 2 cut(s) 32, 96
MslI CAYNNNNRTG 1 cut(s) 145
MspR9I CCNGG 1 cut(s) 66
MunI CAATTG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 66
NcoI CCATGG 1 cut(s) 40
NheI GCTAGC 1 cut(s) 85
NlaIII CATG 2 cut(s) 44, 144
NlaIV GGNNCC 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 145
Sau96I GGNCC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 66
SetI ASST 2 cut(s) 13, 132
SfaNI GCATC 1 cut(s) 103
SgeI CNNG 7 cut(s) 53, 77, 78, 84, 98, 102, 153
SinI GGWCC 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 145
Sse9I AATT 2 cut(s) 32, 96
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 1 cut(s) 40
TaiI ACGT 1 cut(s) 13
TasI AATT 2 cut(s) 32, 96
TspDTI ATGAA 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 59
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.