RchiOBHm_Chr5g0051081

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
52042321 .. 52043574
1254 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 213 bp
ATGCCCCTAATAACCAACGAATGGCAAGTGCTTTTCCTTGTGTGGATCCTATTTCAATGGGAACTTGATGAGTCGATCCGCCTACACGTCTTGCTTTTACTGCTATATCCGGAGTTACTCCACGTATTGCTTGACGTAAAACAGATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTATGGCTCGATAGATAATTTGATAAGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

8.37

Weight (kDa)

4.2

Isoelectric Point (pI)

29.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 21
AccIII TCCGGA 1 cut(s) 109
AciI CCGC 1 cut(s) 79
AclWI GGATC 3 cut(s) 40, 53, 70
AfiI CCNNNNNNNGG 1 cut(s) 21
AflIII ACRYGT 1 cut(s) 85
AgsI TTSAA 2 cut(s) 56, 173
AjiI CACGTC 1 cut(s) 88
AlwI GGATC 3 cut(s) 40, 53, 70
Aor13HI TCCGGA 1 cut(s) 109
BamHI GGATCC 1 cut(s) 45
BmgBI CACGTC 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 47
BsaAI YACGTR 1 cut(s) 124
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 21
BseAI TCCGGA 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 21
BsiSI CCGG 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 21
Bsp13I TCCGGA 1 cut(s) 109
Bsp143I GATC 2 cut(s) 45, 75
BspACI CCGC 1 cut(s) 79
BspEI TCCGGA 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 47
BspPI GGATC 3 cut(s) 40, 53, 70
BssMI GATC 2 cut(s) 45, 75
BstBAI YACGTR 1 cut(s) 124
BstKTI GATC 2 cut(s) 48, 78
BstMBI GATC 2 cut(s) 45, 75
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BtrI CACGTC 1 cut(s) 88
CviJI RGCY 2 cut(s) 186, 207
CviKI_1 RGCY 2 cut(s) 186, 207
DpnI GATC 2 cut(s) 47, 77
DpnII GATC 2 cut(s) 45, 75
EciI GGCGGA 1 cut(s) 68
FaiI YATR 2 cut(s) 106, 183
HapII CCGG 1 cut(s) 110
HinfI GANTC 2 cut(s) 71, 173
HpaII CCGG 1 cut(s) 110
Hpy188III TCNNGA 1 cut(s) 110
HpyCH4IV ACGT 3 cut(s) 87, 123, 135
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpySE526I ACGT 3 cut(s) 87, 123, 135
Kpn2I TCCGGA 1 cut(s) 109
Kzo9I GATC 2 cut(s) 45, 75
LpnPI CCDG 1 cut(s) 123
MaeII ACGT 3 cut(s) 87, 123, 135
MaeIII GTNAC 1 cut(s) 114
MalI GATC 2 cut(s) 47, 77
MboI GATC 2 cut(s) 45, 75
MflI RGATCY 1 cut(s) 45
MluCI AATT 1 cut(s) 196
MlyI GAGTC 1 cut(s) 80
MroI TCCGGA 1 cut(s) 109
MspI CCGG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 2 cut(s) 45, 75
NlaIV GGNNCC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 173
PflMI CCANNNNNTGG 1 cut(s) 21
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
Ppu21I YACGTR 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 47
PsuI RGATCY 1 cut(s) 45
Sau3AI GATC 2 cut(s) 45, 75
SchI GAGTC 1 cut(s) 80
SetI ASST 3 cut(s) 90, 126, 138
SgeI CNNG 9 cut(s) 38, 50, 77, 98, 103, 122, 134, 143, 199
Sse9I AATT 1 cut(s) 196
SsiI CCGC 1 cut(s) 79
TaiI ACGT 3 cut(s) 90, 126, 138
TaqI TCGA 2 cut(s) 74, 188
TasI AATT 1 cut(s) 196
TfiI GAWTC 1 cut(s) 173
Van91I CCANNNNNTGG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.