RchiOBHm_Chr5g0051221

Signal recognition particle receptor subunit

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
52227378 .. 52228350
973 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 486 bp
ATGAGGGAACTTTTGTGCTCCATTCTGAAAAATCAAAGACATTACTATGTCCTCATAAAAAAGAACGGAAAGTTAAAGCCTGCACATCTTGTTGATGTTCCTGGGCATTCTCGCCTTAGACCCAAGTTAGACGAGTTTCTGCCTCAAGCAACTGGTATAGTATTTGTGGTGGATTTTGTGGGGTTTTTACCAAACTGTCGTGCTGCTTCAGAGTACCTGTATGACATTTTGACCAAGGCAACTGTAGTGAAGAAGAAAATTCATGTTCTTATTCTTAGCAATAAGACAGACAAAGTGACAGCAAATGGCAAGGAATTTATTCGAAAACAATTGGAGAAGAAACTAAGTGCAATATCAACGGCTGATATTGCAGATGATTTTACTCTTGGGGTATTGGGAAAACCATTTTCATTCCCTCAATGTCAGAACAAAGTTAAAGTTGATGAAGCTGCTGGTATTACTGGTAACATAACTCAGGTGCAGTAG

Protein Analysis

161

Amino Acids

17.98

Weight (kDa)

9.6

Isoelectric Point (pI)

18.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRPRB PF09439 25 - 120 3e-18 Signal recognition particle receptor beta subunit
Arf PF00025 29 - 113 1.5e-08 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 258, 314
AcuI CTGAAG 1 cut(s) 192
AfaI GTAC 1 cut(s) 215
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 1 cut(s) 449
AluI AGCT 1 cut(s) 449
Alw21I GWGCWC 1 cut(s) 20
ApeKI GCWGC 2 cut(s) 203, 449
ApoI RAATTY 2 cut(s) 258, 314
Asp700I GAANNNNTTC 1 cut(s) 318
AsuII TTCGAA 1 cut(s) 322
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 2 cut(s) 190, 436
BceAI ACGGC 1 cut(s) 375
BciT130I CCWGG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 243
BisI GCNGC 2 cut(s) 204, 450
BlsI GCNGC 2 cut(s) 205, 451
Bme1390I CCNGG 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 102
Bpu14I TTCGAA 1 cut(s) 322
BpuEI CTTGAG 1 cut(s) 129
BsaJI CCNNGG 2 cut(s) 101, 234
Bse1I ACTGG 2 cut(s) 157, 466
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 2 cut(s) 101, 234
BseNI ACTGG 2 cut(s) 157, 466
BseXI GCAGC 2 cut(s) 190, 436
BsgI GTGCAG 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 20
BsmI GAATGC 1 cut(s) 106
Bsp119I TTCGAA 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 20
BspT104I TTCGAA 1 cut(s) 322
BsrI ACTGG 2 cut(s) 157, 466
BssECI CCNNGG 2 cut(s) 101, 234
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 197, 244
BstBI TTCGAA 1 cut(s) 322
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 4 cut(s) 116, 275, 344, 474
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 100
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 2 cut(s) 190, 436
Cac8I GCNNGC 1 cut(s) 81
Csp6I GTAC 1 cut(s) 214
CviAII CATG 1 cut(s) 263
CviJI RGCY 3 cut(s) 79, 362, 449
CviKI_1 RGCY 3 cut(s) 79, 362, 449
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 4 cut(s) 116, 275, 344, 474
Eco130I CCWWGG 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 1 cut(s) 266
FaiI YATR 6 cut(s) 48, 56, 158, 222, 264, 470
FatI CATG 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 204, 450
Fsp4HI GCNGC 2 cut(s) 204, 450
GluI GCNGC 2 cut(s) 204, 450
Hin1II CATG 1 cut(s) 266
Hpy188I TCNGA 3 cut(s) 27, 211, 426
HpyCH4III ACNGT 2 cut(s) 197, 244
HpyCH4V TGCA 4 cut(s) 83, 350, 371, 481
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 4 cut(s) 116, 275, 344, 474
Hsp92II CATG 1 cut(s) 266
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 8 cut(s) 87, 93, 114, 138, 230, 438, 447, 461
Lsp1109I GCAGC 2 cut(s) 190, 436
MaeIII GTNAC 2 cut(s) 295, 464
MboII GAAGA 3 cut(s) 262, 265, 349
MfeI CAATTG 1 cut(s) 329
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 3 cut(s) 258, 314, 329
MnlI CCTC 3 cut(s) 62, 153, 426
MroXI GAANNNNTTC 1 cut(s) 318
MseI TTAA 2 cut(s) 74, 435
MslI CAYNNNNRTG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 102
MunI CAATTG 1 cut(s) 329
Mva1269I GAATGC 1 cut(s) 106
MvaI CCWGG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 368
NlaIII CATG 1 cut(s) 266
NmuCI GTSAC 1 cut(s) 295
NspV TTCGAA 1 cut(s) 322
PctI GAATGC 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 318
PkrI GCNGC 2 cut(s) 205, 451
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 45
SaqAI TTAA 2 cut(s) 74, 435
SatI GCNGC 2 cut(s) 204, 450
ScrFI CCNGG 1 cut(s) 102
SduI GDGCHC 1 cut(s) 20
SetI ASST 3 cut(s) 219, 451, 480
SfcI CTRYAG 1 cut(s) 243
SfuI TTCGAA 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 45
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
Sse9I AATT 3 cut(s) 258, 314, 329
StyD4I CCNGG 1 cut(s) 100
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 2 cut(s) 197, 244
TaqI TCGA 1 cut(s) 322
TasI AATT 3 cut(s) 258, 314, 329
Tru1I TTAA 2 cut(s) 74, 435
Tru9I TTAA 2 cut(s) 74, 435
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 2 cut(s) 203, 449
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 3 cut(s) 251, 399, 459
TspGWI ACGGA 1 cut(s) 81
XapI RAATTY 2 cut(s) 258, 314
XmnI GAANNNNTTC 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.