RchiOBHm_Chr5g0051701

N-alpha-acetyltransferase 35, NatC auxiliary

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
53029803 .. 53030762
960 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 411 bp
ATGAAACTTCTTCACGATCTTGCAATTGATGTCATATGTTCCTCCCCATTGAAGCCATCTTTAGGAACTGTTCTGCACTATGTCGTTGAATTCCAAAAATATTTGCCTGATTTAGTAGCAAGAGCTCATCTTCAGCATCTGCTGGATGAAAATGGGAAACTCTATGGCCAGGATCCTGTCTTTGGTGTTATTACCAGAGCTGCAGCTATACCTGATTCTATAAGGAACCATGATATGCAGAAACATGAATCAATTGTTCACCTGGGACAGTGGCAAAGGTGTAAGCTTGGAAAGATTTTACAAGAGTGGCGTGTTGTTTACATACAGGTATGTCAAGTATCTTCAAAGAAAGAGATTCTATATGTTTTTTCTACTTTCTCAAGGCTCAAATGTTTTCTGTATCTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mak10

Protein Analysis

136

Amino Acids

15.72

Weight (kDa)

9.08

Isoelectric Point (pI)

26.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_NAA35 PF25789 12 - 116 1.5e-19 NAA35-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 167, 180
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 116
AfiI CCNNNNNNNGG 2 cut(s) 62, 182
AgsI TTSAA 3 cut(s) 52, 89, 345
AjnI CCWGG 2 cut(s) 168, 261
AluBI AGCT 4 cut(s) 125, 200, 206, 286
AluI AGCT 4 cut(s) 125, 200, 206, 286
Alw21I GWGCWC 1 cut(s) 127
AlwI GGATC 2 cut(s) 167, 180
AlwNI CAGNNNCTG 1 cut(s) 139
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 2 cut(s) 200, 203
ApoI RAATTY 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 251
BalI TGGCCA 1 cut(s) 168
BamHI GGATCC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 2 cut(s) 187, 215
BccI CCATC 1 cut(s) 64
BciT130I CCWGG 2 cut(s) 170, 263
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 2 cut(s) 201, 204
BlsI GCNGC 2 cut(s) 202, 205
Bme1390I CCNGG 2 cut(s) 170, 263
BmiI GGNNCC 2 cut(s) 174, 227
BmrFI CCNGG 2 cut(s) 170, 263
BmsI GCATC 1 cut(s) 145
BpuEI CTTGAG 1 cut(s) 364
BsaJI CCNNGG 1 cut(s) 262
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 182
BseBI CCWGG 2 cut(s) 170, 263
BseDI CCNNGG 1 cut(s) 262
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 2 cut(s) 62, 182
BseXI GCAGC 2 cut(s) 187, 215
BsgI GTGCAG 1 cut(s) 59
BshFI GGCC 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 127
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 2 cut(s) 62, 182
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 2 cut(s) 16, 172
BspANI GGCC 1 cut(s) 168
BspLI GGNNCC 2 cut(s) 174, 227
BspMAI CTGCAG 1 cut(s) 205
BspPI GGATC 2 cut(s) 167, 180
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 2 cut(s) 16, 172
Bst2UI CCWGG 2 cut(s) 170, 263
Bst4CI ACNGT 2 cut(s) 70, 270
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 2 cut(s) 19, 175
BstMBI GATC 2 cut(s) 16, 172
BstNI CCWGG 2 cut(s) 170, 263
BstSCI CCNGG 2 cut(s) 168, 261
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 2 cut(s) 187, 215
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 1 cut(s) 168
BtsCI GGATG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 275
CaiI CAGNNNCTG 1 cut(s) 139
CviAII CATG 2 cut(s) 230, 245
CviJI RGCY 7 cut(s) 55, 125, 168, 200, 206, 286, 385
CviKI_1 RGCY 7 cut(s) 55, 125, 168, 200, 206, 286, 385
DpnI GATC 2 cut(s) 18, 174
DpnII GATC 2 cut(s) 16, 172
EaeI YGGCCR 1 cut(s) 166
Ecl136II GAGCTC 1 cut(s) 125
Eco24I GRGCYC 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 116
EcoICRI GAGCTC 1 cut(s) 125
EcoRI GAATTC 1 cut(s) 89
EcoRII CCWGG 2 cut(s) 168, 261
EcoT38I GRGCYC 1 cut(s) 127
FaeI CATG 2 cut(s) 233, 248
FaqI GGGAC 1 cut(s) 279
FatI CATG 2 cut(s) 229, 244
FauNDI CATATG 1 cut(s) 35
Fnu4HI GCNGC 2 cut(s) 201, 204
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 2 cut(s) 201, 204
GluI GCNGC 2 cut(s) 201, 204
HaeIII GGCC 1 cut(s) 168
Hin1II CATG 2 cut(s) 233, 248
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 3 cut(s) 215, 248, 355
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 2 cut(s) 259, 319
Hpy188I TCNGA 1 cut(s) 405
Hpy188III TCNNGA 1 cut(s) 14
Hpy8I GTNNAC 2 cut(s) 259, 319
HpyCH4III ACNGT 2 cut(s) 70, 270
HpyCH4V TGCA 4 cut(s) 23, 76, 203, 238
Hsp92II CATG 2 cut(s) 233, 248
Kzo9I GATC 2 cut(s) 16, 172
Lsp1109I GCAGC 2 cut(s) 187, 215
LweI GCATC 1 cut(s) 145
MalI GATC 2 cut(s) 18, 174
MboI GATC 2 cut(s) 16, 172
MboII GAAGA 2 cut(s) 122, 333
MfeI CAATTG 2 cut(s) 24, 252
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 127
MlsI TGGCCA 1 cut(s) 168
MluCI AATT 3 cut(s) 24, 89, 252
MluNI TGGCCA 1 cut(s) 168
MnlI CCTC 1 cut(s) 52
Mox20I TGGCCA 1 cut(s) 168
MscI TGGCCA 1 cut(s) 168
Msp20I TGGCCA 1 cut(s) 168
MspR9I CCNGG 2 cut(s) 170, 263
MunI CAATTG 2 cut(s) 24, 252
MvaI CCWGG 2 cut(s) 170, 263
NdeI CATATG 1 cut(s) 35
NdeII GATC 2 cut(s) 16, 172
NlaIII CATG 2 cut(s) 233, 248
NlaIV GGNNCC 2 cut(s) 174, 227
PfeI GAWTC 3 cut(s) 215, 248, 355
PkrI GCNGC 2 cut(s) 202, 205
Psp124BI GAGCTC 1 cut(s) 127
Psp6I CCWGG 2 cut(s) 168, 261
PspGI CCWGG 2 cut(s) 168, 261
PspN4I GGNNCC 2 cut(s) 174, 227
PstI CTGCAG 1 cut(s) 205
PstNI CAGNNNCTG 1 cut(s) 139
PsuI RGATCY 1 cut(s) 172
SacI GAGCTC 1 cut(s) 127
SatI GCNGC 2 cut(s) 201, 204
Sau3AI GATC 2 cut(s) 16, 172
ScrFI CCNGG 2 cut(s) 170, 263
SduI GDGCHC 1 cut(s) 127
SetI ASST 8 cut(s) 127, 202, 208, 214, 264, 281, 288, 330
SfaNI GCATC 1 cut(s) 145
SfcI CTRYAG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
Sse9I AATT 3 cut(s) 24, 89, 252
SspI AATATT 1 cut(s) 101
SstI GAGCTC 1 cut(s) 127
StyD4I CCNGG 2 cut(s) 168, 261
TaaI ACNGT 2 cut(s) 70, 270
TasI AATT 3 cut(s) 24, 89, 252
TfiI GAWTC 3 cut(s) 215, 248, 355
TscAI CASTG 1 cut(s) 275
TseI GCWGC 2 cut(s) 200, 203
TspDTI ATGAA 3 cut(s) 17, 162, 261
TspRI CASTG 1 cut(s) 275
XapI RAATTY 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.