Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

53728007 .. 53737705

Gene Structure 9699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGAGGACAGGAAGCGCCGAGAGCTTTTGGTATGCTACATATCCCGATCAAGAACTTCATGGCTTAGTACCTGATCAATGGAAAGAGATGGGATGGCAGGGAAGAGATCCATCTACTGATTTCAAGTTCCATTTCCCTCCATTCCTCTGTTGTTCTGCAGCTAATTTCTTCCTAGTTTCTTCTTTCAGTTTCTGGCATTTTCTTATTTGGTTACTTTGGATGATTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

76

Amino Acids

9.09

Weight (kDa)

5.33

Isoelectric Point (pI)

34.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	8 - 42	2.1e-07	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	101
AfaI	GTAC	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	2 cut(s)	24, 161
AluI	AGCT	2 cut(s)	24, 161
AlwI	GGATC	1 cut(s)	101
AlwNI	CAGNNNCTG	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	170
BccI	CCATC	3 cut(s)	82, 87, 118
BclI	TGATCA	1 cut(s)	73
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	156
BfoI	RGCGCY	1 cut(s)	18
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
BseGI	GGATG	2 cut(s)	98, 225
BseXI	GCAGC	1 cut(s)	170
Bsp143I	GATC	3 cut(s)	46, 73, 106
BspMAI	CTGCAG	1 cut(s)	160
BspPI	GGATC	1 cut(s)	101
BssMI	GATC	3 cut(s)	46, 73, 106
Bst6I	CTCTTC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	64
BstF5I	GGATG	2 cut(s)	98, 225
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	3 cut(s)	49, 76, 109
BstMBI	GATC	3 cut(s)	46, 73, 106
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	170
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	98, 225
CaiI	CAGNNNCTG	1 cut(s)	192
CfoI	GCGC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	3 cut(s)	24, 63, 161
CviKI_1	RGCY	3 cut(s)	24, 63, 161
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	1 cut(s)	64
DpnI	GATC	3 cut(s)	48, 75, 108
DpnII	GATC	3 cut(s)	46, 73, 106
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
FaeI	CATG	1 cut(s)	62
FaiI	YATR	3 cut(s)	33, 40, 60
FatI	CATG	1 cut(s)	58
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	173
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	1 cut(s)	159
HaeII	RGCGCY	1 cut(s)	18
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	62
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
Hpy188III	TCNNGA	2 cut(s)	44, 50
HpyCH4V	TGCA	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
HpyF3I	CTNAG	1 cut(s)	64
Hsp92II	CATG	1 cut(s)	62
HspAI	GCGC	1 cut(s)	15
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	3 cut(s)	46, 73, 106
LpnPI	CCDG	3 cut(s)	83, 84, 178
Lsp1109I	GCAGC	1 cut(s)	170
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	210
MalI	GATC	3 cut(s)	48, 75, 108
MboI	GATC	3 cut(s)	46, 73, 106
MboII	GAAGA	3 cut(s)	114, 160, 171
MflI	RGATCY	1 cut(s)	106
MluCI	AATT	1 cut(s)	163
MnlI	CCTC	2 cut(s)	147, 155
MwoI	GCNNNNNNNGC	1 cut(s)	21
NdeII	GATC	3 cut(s)	46, 73, 106
NlaIII	CATG	1 cut(s)	62
NmeAIII	GCCGAG	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	106
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	3 cut(s)	46, 73, 106
SetI	ASST	3 cut(s)	26, 73, 163
SfcI	CTRYAG	1 cut(s)	156
Sse9I	AATT	1 cut(s)	163
SspMI	CTAG	1 cut(s)	173
TasI	AATT	1 cut(s)	163
TseI	GCWGC	1 cut(s)	158
TspDTI	ATGAA	1 cut(s)	47
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.