Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

56749642 .. 56751261

Gene Structure 1620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGACCGGCCGGACTCCTCTTCCAACGGCGACGACGATCGCCAAAACCTAATCGAACAGAAAGAGCGCAAGCAGCGGCAGCTCCCCAGTCCTCGATCCACCACCACTTTCCACATCTACGACGGCGATGTTGACCACCACCGCGACATACGACGTCGTTTCGCCACCCTCAAGCTCGGTGACTTGTTCAACAAGCTGTTCCTCATCTTCTTCAACTTCATCCCTCTCGTTGTCCTCATCCTCTTTTCACCACCGACATCAAGAGCCTCTTCTTCTCCCACCTCTCCGTCCCTCTCTCCGATTCACTCTCTGATAAGCTCCACAAGTCCGAATTACAAGTTGTCTTCTTGCTCCTCCAGCAGCAGCTCGGTCTCTTCGACCTCAGGAACCAAACGCATCCCAATTCCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0034645 GO:0036065 GO:0036066 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0046922 GO:0070085 GO:0071704 GO:0140096 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

O-FucT

Protein Analysis

137

Amino Acids

15.28

Weight (kDa)

9.79

Isoelectric Point (pI)

82.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	157
AccII	CGCG	1 cut(s)	144
AciI	CCGC	2 cut(s)	76, 142
AclWI	GGATC	1 cut(s)	90
AcoI	YGGCCR	1 cut(s)	8
AcyI	GRCGYC	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	190, 214
AluBI	AGCT	5 cut(s)	82, 175, 196, 318, 366
AluI	AGCT	5 cut(s)	82, 175, 196, 318, 366
Alw26I	GTCTC	1 cut(s)	376
AlwI	GGATC	1 cut(s)	90
AoxI	GGCC	1 cut(s)	8
ApeKI	GCWGC	4 cut(s)	73, 79, 360, 363
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	191, 240
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	336
BbvI	GCAGC	4 cut(s)	85, 91, 372, 375
BceAI	ACGGC	2 cut(s)	43, 139
BcoDI	GTCTC	1 cut(s)	376
BisI	GCNGC	5 cut(s)	74, 77, 80, 361, 364
BlsI	GCNGC	5 cut(s)	75, 78, 81, 362, 365
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	388
BmrI	ACTGGG	1 cut(s)	81
BmsI	GCATC	1 cut(s)	405
BmuI	ACTGGG	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	154
BsaI	GGTCTC	1 cut(s)	376
Bse118I	RCCGGY	1 cut(s)	6
Bse1I	ACTGG	1 cut(s)	87
Bse21I	CCTNAGG	1 cut(s)	382
BseGI	GGATG	3 cut(s)	219, 237, 396
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	87
BseRI	GAGGAG	2 cut(s)	7, 343
BseX3I	CGGCCG	1 cut(s)	8
BseXI	GCAGC	4 cut(s)	85, 91, 372, 375
Bsh1236I	CGCG	1 cut(s)	144
Bsh1285I	CGRYCG	2 cut(s)	11, 40
BshFI	GGCC	1 cut(s)	10
BsiEI	CGRYCG	2 cut(s)	11, 40
BsiSI	CCGG	2 cut(s)	7, 11
BslFI	GGGAC	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	376
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	10
Bso31I	GGTCTC	1 cut(s)	376
Bsp143I	GATC	2 cut(s)	37, 95
BspACI	CCGC	2 cut(s)	76, 142
BspANI	GGCC	1 cut(s)	10
BspCNI	CTCAG	1 cut(s)	395
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	388
BspPI	GGATC	1 cut(s)	90
BspTNI	GGTCTC	1 cut(s)	376
BsrFI	RCCGGY	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	87
BssAI	RCCGGY	1 cut(s)	6
BssMI	GATC	2 cut(s)	37, 95
BssNI	GRCGYC	1 cut(s)	154
Bst6I	CTCTTC	3 cut(s)	25, 274, 379
BstACI	GRCGYC	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	1 cut(s)	382
BstF5I	GGATG	3 cut(s)	219, 237, 396
BstFNI	CGCG	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	2 cut(s)	40, 98
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	2 cut(s)	37, 95
BstMCI	CGRYCG	2 cut(s)	11, 40
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 79, 357
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	4 cut(s)	85, 91, 372, 375
BstV2I	GAAGAC	1 cut(s)	336
BstZI	CGGCCG	1 cut(s)	8
Bsu36I	CCTNAGG	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	10
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	3 cut(s)	219, 237, 396
Cac8I	GCNNGC	1 cut(s)	71
CfoI	GCGC	1 cut(s)	69
Cfr10I	RCCGGY	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	4
CviJI	RGCY	7 cut(s)	10, 82, 175, 196, 266, 318, 366
CviKI_1	RGCY	7 cut(s)	10, 82, 175, 196, 266, 318, 366
DdeI	CTNAG	1 cut(s)	382
DpnI	GATC	2 cut(s)	39, 97
DpnII	GATC	2 cut(s)	37, 95
EaeI	YGGCCR	1 cut(s)	8
EagI	CGGCCG	1 cut(s)	8
Eam1104I	CTCTTC	3 cut(s)	25, 274, 379
EarI	CTCTTC	3 cut(s)	25, 274, 379
EclXI	CGGCCG	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	376
Eco47I	GGWCC	1 cut(s)	4
Eco52I	CGGCCG	1 cut(s)	8
Eco81I	CCTNAGG	1 cut(s)	382
FaiI	YATR	1 cut(s)	149
FalI	AAGNNNNNCTT	2 cut(s)	253, 285
FaqI	GGGAC	1 cut(s)	274
Fnu4HI	GCNGC	5 cut(s)	74, 77, 80, 361, 364
FokI	GGATG	3 cut(s)	206, 224, 383
Fsp4HI	GCNGC	5 cut(s)	74, 77, 80, 361, 364
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	5 cut(s)	74, 77, 80, 361, 364
GsuI	CTGGAG	1 cut(s)	340
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	2 cut(s)	7, 11
HhaI	GCGC	1 cut(s)	69
Hin1I	GRCGYC	1 cut(s)	154
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	14, 301
HpaII	CCGG	2 cut(s)	7, 11
HphI	GGTGA	2 cut(s)	191, 240
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	300, 312, 330
Hpy188III	TCNNGA	2 cut(s)	261, 384
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	5 cut(s)	35, 38, 125, 156, 159
HpyCH4IV	ACGT	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 79, 357
HpyF3I	CTNAG	1 cut(s)	382
HpySE526I	ACGT	1 cut(s)	154
Hsp92I	GRCGYC	1 cut(s)	154
HspAI	GCGC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	37, 95
LmnI	GCTCC	3 cut(s)	87, 323, 356
LpnPI	CCDG	5 cut(s)	20, 24, 100, 369, 370
Lsp1109I	GCAGC	4 cut(s)	85, 91, 372, 375
LweI	GCATC	1 cut(s)	405
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	2 cut(s)	39, 97
MboI	GATC	2 cut(s)	37, 95
MboII	GAAGA	7 cut(s)	12, 199, 202, 261, 264, 336, 366
MluCI	AATT	2 cut(s)	331, 402
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	76
MspI	CCGG	2 cut(s)	7, 11
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	3 cut(s)	73, 79, 357
NdeII	GATC	2 cut(s)	37, 95
NlaIV	GGNNCC	1 cut(s)	388
NmuCI	GTSAC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	2 cut(s)	33, 374
PfeI	GAWTC	1 cut(s)	301
PkrI	GCNGC	5 cut(s)	75, 78, 81, 362, 365
Ple19I	CGATCG	1 cut(s)	40
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	388
PspPI	GGNCC	1 cut(s)	4
PvuI	CGATCG	1 cut(s)	40
SatI	GCNGC	5 cut(s)	74, 77, 80, 361, 364
Sau3AI	GATC	2 cut(s)	37, 95
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	8
SetI	ASST	9 cut(s)	51, 84, 157, 177, 198, 284, 320, 368, 383
SfaNI	GCATC	1 cut(s)	405
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	2 cut(s)	331, 402
SsiI	CCGC	2 cut(s)	76, 142
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	3 cut(s)	54, 94, 377
TaqII	GACCGA	1 cut(s)	358
TasI	AATT	2 cut(s)	331, 402
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	1 cut(s)	301
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	4 cut(s)	73, 79, 360, 363
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	208
TspGWI	ACGGA	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	4
ZraI	GACGTC	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.