RchiOBHm_Chr5g0054411

Lignin degradation and detoxification of lignin-derived products

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
57008442 .. 57008853
412 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 159 bp
ATGGTTCAGATGATCACGATTCACGACCACCACCCTCGAGGACGTCCTGCTTTCCCACATCTTTCACCCTATAACAGAACCCAAGCAGCAACAGACTTTACCAAGCAATTTAGGAGCCTTGCAACAAAGACCACCCTACCAAAGTCCCATTACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

52

Amino Acids

6.06

Weight (kDa)

10.62

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 46
AbsI CCTCGAGG 1 cut(s) 36
AcyI GRCGYC 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 57
AvaI CYCGRG 1 cut(s) 36
BbvI GCAGC 1 cut(s) 98
BclI TGATCA 1 cut(s) 12
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 116
BsaHI GRCGYC 1 cut(s) 43
BseXI GCAGC 1 cut(s) 98
BsiHKCI CYCGRG 1 cut(s) 36
BslFI GGGAC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 130
BsoBI CYCGRG 1 cut(s) 36
Bsp143I GATC 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 116
BssMI GATC 1 cut(s) 12
BssNI GRCGYC 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 43
BstKTI GATC 1 cut(s) 15
BstMBI GATC 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 98
CviJI RGCY 1 cut(s) 117
CviKI_1 RGCY 1 cut(s) 117
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 36
FaiI YATR 1 cut(s) 72
FaqI GGGAC 1 cut(s) 130
FbaI TGATCA 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 87
Hin1I GRCGYC 1 cut(s) 43
HinfI GANTC 1 cut(s) 19
HphI GGTGA 1 cut(s) 57
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 2 cut(s) 16, 23
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 1 cut(s) 122
HpySE526I ACGT 1 cut(s) 43
Hsp92I GRCGYC 1 cut(s) 43
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 1 cut(s) 60
Lsp1109I GCAGC 1 cut(s) 98
MaeII ACGT 1 cut(s) 43
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MluCI AATT 1 cut(s) 107
MnlI CCTC 2 cut(s) 32, 45
NdeII GATC 1 cut(s) 12
NlaIV GGNNCC 1 cut(s) 116
PaeR7I CTCGAG 1 cut(s) 36
PfeI GAWTC 1 cut(s) 19
PkrI GCNGC 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 116
PspXI VCTCGAGB 1 cut(s) 36
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 1 cut(s) 12
SetI ASST 1 cut(s) 46
Sfr274I CTCGAG 1 cut(s) 36
SgeI CNNG 8 cut(s) 28, 35, 48, 50, 59, 95, 115, 131
SlaI CTCGAG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
Sse9I AATT 1 cut(s) 107
TaiI ACGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 37
TasI AATT 1 cut(s) 107
TfiI GAWTC 1 cut(s) 19
TseI GCWGC 1 cut(s) 86
XhoI CTCGAG 1 cut(s) 36
ZraI GACGTC 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.