RchiOBHm_Chr5g0054641

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
57292059 .. 57292410
352 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGCTTTTCTCAATGATGAAAGAAAAGGGTATTAAACCAATAAATAGTTTCACTTTTACAGCTGTTTTGACTGCTTGTAGGCAATCAGGTCTAGTACATGAAGGGCGAAAGCATTTTGAGAGCATGATTAAAGACTACTCCCTTGTCCCTGGTCCTTGCAGGATATATGGCAATGTTGAGCTAGCTGAACTTGTGGCAGCCCGTTTGTCCCAGTTAGATCCTCGAACTACAACCCCCATGTTCTTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

83

Amino Acids

9.39

Weight (kDa)

9.14

Isoelectric Point (pI)

19.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 212
AfaI GTAC 1 cut(s) 96
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 3 cut(s) 62, 181, 185
AluI AGCT 3 cut(s) 62, 181, 185
AlwI GGATC 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 152
AsuNHI GCTAGC 1 cut(s) 181
AvaII GGWCC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 150
BfaI CTAG 2 cut(s) 92, 182
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 150
BmrI ACTGGG 1 cut(s) 205
BmtI GCTAGC 1 cut(s) 185
BmuI ACTGGG 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 211
Bse3DI GCAATG 1 cut(s) 178
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 178
BseNI ACTGG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 209
BslFI GGGAC 2 cut(s) 131, 193
BsmFI GGGAC 2 cut(s) 131, 193
Bsp143I GATC 1 cut(s) 217
BspOI GCTAGC 1 cut(s) 185
BspPI GGATC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 178
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 183
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 95
CviAII CATG 3 cut(s) 98, 124, 238
CviJI RGCY 4 cut(s) 62, 181, 185, 200
CviKI_1 RGCY 4 cut(s) 62, 181, 185, 200
CviQI GTAC 1 cut(s) 95
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 148
FaeI CATG 3 cut(s) 101, 127, 241
FaiI YATR 6 cut(s) 99, 125, 166, 168, 239, 248
FaqI GGGAC 2 cut(s) 131, 193
FatI CATG 3 cut(s) 97, 123, 237
Fnu4HI GCNGC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 2 cut(s) 92, 182
GluI GCNGC 1 cut(s) 198
Hin1II CATG 3 cut(s) 101, 127, 241
HpyAV CCTTC 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 159
Hsp92II CATG 3 cut(s) 101, 127, 241
Kzo9I GATC 1 cut(s) 217
LpnPI CCDG 5 cut(s) 72, 135, 145, 162, 224
Lsp1109I GCAGC 1 cut(s) 209
MaeI CTAG 2 cut(s) 92, 182
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MflI RGATCY 1 cut(s) 217
MnlI CCTC 1 cut(s) 231
MseI TTAA 2 cut(s) 33, 129
MspA1I CMGCKG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
NdeII GATC 1 cut(s) 217
NheI GCTAGC 1 cut(s) 181
NlaIII CATG 3 cut(s) 101, 127, 241
PkrI GCNGC 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspPI GGNCC 1 cut(s) 152
PsuI RGATCY 1 cut(s) 217
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
SaqAI TTAA 2 cut(s) 33, 129
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 150
SetI ASST 4 cut(s) 64, 91, 183, 187
SinI GGWCC 1 cut(s) 152
SspMI CTAG 2 cut(s) 92, 182
StyD4I CCNGG 1 cut(s) 148
TaqI TCGA 1 cut(s) 223
TatI WGTACW 1 cut(s) 94
Tru1I TTAA 2 cut(s) 33, 129
Tru9I TTAA 2 cut(s) 33, 129
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 2 cut(s) 32, 114
VpaK11BI GGWCC 1 cut(s) 152
XspI CTAG 2 cut(s) 92, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.