RchiOBHm_Chr5g0054771

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
57479184 .. 57480548
1365 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 339 bp
ATGGATGTTGATTCACAACCAACTATGGAGGAAACCATTTTGGTGGGAGATGATCTGATGATGGGCCCGCCATCACCAATAATTCCACCAGAAATTGCTTCTCATGTGCTTCTCATGTGCTTGAAGGTGTTGATTTGCTTGAAGGTCTATTTCTATGATCGGGAACTGAGGAAACGACTTCAGGACAGTGAGCAGAAACTGGGGTTGTCGATGCCTTTAAATGATGCAAAGGAAAGAGCTTCTCAGCTTGAAACAGAGGTCACATCATTAGATAGGTATGTTCTGAAATGGTTACAAGTAATGGAAGTAGCTATCAAGTACCTGAAGCACTTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.94

Weight (kDa)

5.12

Isoelectric Point (pI)

52.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7803 PF25086 1 - 38 2.3e-17 Domain of unknown function (DUF7803)
DUF7803 PF25086 53 - 95 2.7e-14 Domain of unknown function (DUF7803)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 68
AcuI CTGAAG 1 cut(s) 164
AfaI GTAC 1 cut(s) 320
AgsI TTSAA 3 cut(s) 124, 142, 251
AluBI AGCT 3 cut(s) 239, 247, 311
AluI AGCT 3 cut(s) 239, 247, 311
AlwNI CAGNNNCTG 1 cut(s) 199
AoxI GGCC 1 cut(s) 64
ApaI GGGCCC 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 64, 65
AsuHPI GGTGA 1 cut(s) 66
BaeGI GKGCMC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 68
BccI CCATC 2 cut(s) 55, 79
BmgT120I GGNCC 2 cut(s) 64, 65
BmiI GGNNCC 1 cut(s) 66
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 2 cut(s) 201, 214
BmuI ACTGGG 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 2 cut(s) 158, 257
BseNI ACTGG 1 cut(s) 204
BseSI GKGCMC 1 cut(s) 68
BshFI GGCC 1 cut(s) 66
BsnI GGCC 1 cut(s) 66
Bsp120I GGGCCC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 52, 157
BspACI CCGC 1 cut(s) 68
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 2 cut(s) 159, 256
BspLI GGNNCC 1 cut(s) 66
BsrI ACTGG 1 cut(s) 204
BssMI GATC 2 cut(s) 52, 157
Bst4CI ACNGT 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 2 cut(s) 167, 243
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 55, 160
BstMBI GATC 2 cut(s) 52, 157
BstSLI GKGCMC 1 cut(s) 68
BstXI CCANNNNNNTGG 1 cut(s) 43
BsuRI GGCC 1 cut(s) 66
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 68
CaiI CAGNNNCTG 1 cut(s) 199
Cfr13I GGNCC 2 cut(s) 64, 65
Csp6I GTAC 1 cut(s) 319
CviAII CATG 2 cut(s) 104, 115
CviJI RGCY 4 cut(s) 66, 239, 247, 311
CviKI_1 RGCY 4 cut(s) 66, 239, 247, 311
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 2 cut(s) 167, 243
DpnI GATC 2 cut(s) 54, 159
DpnII GATC 2 cut(s) 52, 157
DraI TTTAAA 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 68
FaeI CATG 2 cut(s) 107, 118
FaiI YATR 5 cut(s) 26, 105, 116, 156, 279
FatI CATG 2 cut(s) 103, 114
FauI CCCGC 1 cut(s) 75
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 68
HaeIII GGCC 1 cut(s) 66
Hin1II CATG 2 cut(s) 107, 118
HinfI GANTC 1 cut(s) 11
HphI GGTGA 1 cut(s) 66
Hpy188I TCNGA 2 cut(s) 57, 285
Hpy188III TCNNGA 2 cut(s) 161, 182
HpyAV CCTTC 2 cut(s) 118, 136
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4V TGCA 1 cut(s) 227
HpyF3I CTNAG 2 cut(s) 167, 243
Hsp92II CATG 2 cut(s) 107, 118
Kzo9I GATC 2 cut(s) 52, 157
LpnPI CCDG 4 cut(s) 102, 167, 185, 335
LweI GCATC 2 cut(s) 201, 214
MaeIII GTNAC 2 cut(s) 259, 291
MalI GATC 2 cut(s) 54, 159
MboI GATC 2 cut(s) 52, 157
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 2 cut(s) 81, 93
MnlI CCTC 3 cut(s) 22, 162, 250
MseI TTAA 1 cut(s) 218
MslI CAYNNNNRTG 1 cut(s) 41
NdeII GATC 2 cut(s) 52, 157
NlaIII CATG 2 cut(s) 107, 118
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 259
PfeI GAWTC 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 66
PspOMI GGGCCC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 64, 65
PstNI CAGNNNCTG 1 cut(s) 199
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 1 cut(s) 218
Sau3AI GATC 2 cut(s) 52, 157
Sau96I GGNCC 2 cut(s) 64, 65
SduI GDGCHC 1 cut(s) 68
SetI ASST 8 cut(s) 129, 147, 241, 249, 261, 278, 313, 324
SfaNI GCATC 2 cut(s) 201, 214
SmiMI CAYNNNNRTG 1 cut(s) 41
Sse9I AATT 2 cut(s) 81, 93
SsiI CCGC 1 cut(s) 68
TaaI ACNGT 1 cut(s) 188
TaqI TCGA 1 cut(s) 209
TasI AATT 2 cut(s) 81, 93
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 1 cut(s) 259
Tsp45I GTSAC 1 cut(s) 259
TspRI CASTG 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.