Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

59878191 .. 59878671

Gene Structure 481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCAGACTATGATTCAAAGATGCTGCTTCCTTTTCTTCGTAGTAGTCAACATTATACACTCGAGAAATGAAATTTGCATCAGAAATGATCTTGTAAAGGAGCAAGTTTTCATTCTTGGAAGAATGGAAAATGCAAAACAAACCCTTGCTATAATCATTAATAAACTAGGGGACATTGAAGGGGTATCGCTTGTTTATCGGATATCTGCATTAAACCTAAACAGATTCTTCAGTTATTTCTTGCCTGTTGTAGAATTTGTGAGTATGCAACATGATGATGAACTATGGGAGGAATTGATCCAGCAGTGTCTTCATAACCTGAGATGGTATTTATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019899 GO:0030897 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033263 GO:0033365 GO:0034613 GO:0035542 GO:0042144 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048284 GO:0050789 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097576 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Clathrin

Protein Analysis

112

Amino Acids

13.4

Weight (kDa)

5.86

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_Vps41	PF23556	21 - 61	3.5e-10	Vps41 TPR-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	292
AcsI	RAATTY	2 cut(s)	72, 254
AcuI	CTGAAG	1 cut(s)	214
AgsI	TTSAA	2 cut(s)	17, 179
AlwI	GGATC	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	2 cut(s)	72, 254
AseI	ATTAAT	1 cut(s)	159
AvaI	CYCGRG	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	11
BccI	CCATC	1 cut(s)	318
BfaI	CTAG	1 cut(s)	167
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
BmeT110I	CYCGRG	1 cut(s)	61
BmsI	GCATC	2 cut(s)	11, 87
BpiI	GAAGAC	1 cut(s)	302
BseMII	CTCAG	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	61
BslFI	GGGAC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	61
Bsp143I	GATC	2 cut(s)	88, 297
BspCNI	CTCAG	1 cut(s)	312
BspPI	GGATC	1 cut(s)	292
BssMI	GATC	2 cut(s)	88, 297
BstDEI	CTNAG	1 cut(s)	320
BstKTI	GATC	2 cut(s)	91, 300
BstMBI	GATC	2 cut(s)	88, 297
BstV1I	GCAGC	1 cut(s)	11
BstV2I	GAAGAC	1 cut(s)	302
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	1 cut(s)	311
CviAII	CATG	1 cut(s)	272
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	2 cut(s)	90, 299
DpnII	GATC	2 cut(s)	88, 297
Eco32I	GATATC	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	214
Eco88I	CYCGRG	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	204
FaeI	CATG	1 cut(s)	275
FaiI	YATR	8 cut(s)	11, 56, 152, 266, 273, 286, 315, 334
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	1 cut(s)	271
Fnu4HI	GCNGC	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	25
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	275
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	2 cut(s)	13, 225
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	2 cut(s)	83, 201
Hpy188III	TCNNGA	1 cut(s)	63
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	173
HpyCH4V	TGCA	5 cut(s)	4, 78, 134, 209, 268
HpyF3I	CTNAG	1 cut(s)	320
Hsp92II	CATG	1 cut(s)	275
Kzo9I	GATC	2 cut(s)	88, 297
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	3 cut(s)	258, 314, 332
Lsp1109I	GCAGC	1 cut(s)	11
LweI	GCATC	2 cut(s)	11, 87
MaeI	CTAG	1 cut(s)	167
MalI	GATC	2 cut(s)	90, 299
MboI	GATC	2 cut(s)	88, 297
MboII	GAAGA	4 cut(s)	28, 132, 220, 302
MluCI	AATT	3 cut(s)	72, 254, 293
MnlI	CCTC	1 cut(s)	283
MseI	TTAA	2 cut(s)	159, 212
MslI	CAYNNNNRTG	1 cut(s)	276
NdeII	GATC	2 cut(s)	88, 297
NlaIII	CATG	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	61
PfeI	GAWTC	2 cut(s)	13, 225
PkrI	GCNGC	1 cut(s)	26
PshBI	ATTAAT	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	159, 212
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	2 cut(s)	88, 297
SetI	ASST	2 cut(s)	219, 321
SfaNI	GCATC	2 cut(s)	11, 87
Sfr274I	CTCGAG	1 cut(s)	61
SlaI	CTCGAG	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	3 cut(s)	72, 254, 293
SspMI	CTAG	1 cut(s)	167
TaqI	TCGA	1 cut(s)	62
TasI	AATT	3 cut(s)	72, 254, 293
TfiI	GAWTC	2 cut(s)	13, 225
Tru1I	TTAA	2 cut(s)	159, 212
Tru9I	TTAA	2 cut(s)	159, 212
TscAI	CASTG	1 cut(s)	311
TseI	GCWGC	1 cut(s)	24
TspDTI	ATGAA	4 cut(s)	84, 100, 294, 302
TspRI	CASTG	1 cut(s)	311
VspI	ATTAAT	1 cut(s)	159
XapI	RAATTY	2 cut(s)	72, 254
XhoI	CTCGAG	1 cut(s)	61
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.