RchiOBHm_Chr5g0056741

Belongs to the DHHC palmitoyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
60552002 .. 60556199
4198 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 321 bp
ATGCAAGATGGAGTGAGAAACAAGCAAGATTTCTTTATTTTCATCTGCATGGGAACATTGGCATCAAGCATTTCTGCTGCTGTTACAGTTCAAAGGATTTGGACTGCTATGCCAACATGGCAAACAGAAGAAATATCAATTCATCATGTGATAGTTCAATATCCAATTCTTGTTGCATTTCTGTGTATTGACATTATTATTATGATTTCTACTATGACACAGTGGCACAAGCATCTCAGGTATCAGACAATCCTTTATGTCCTTTGGCTTAAGCTCACTACAGCAATATTCTTGCACCTTGGCCAAACAAACAAGTACTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

106

Amino Acids

12.4

Weight (kDa)

8.69

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 301
AfaI GTAC 1 cut(s) 317
AflII CTTAAG 1 cut(s) 269
AgsI TTSAA 2 cut(s) 92, 158
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
AoxI GGCC 1 cut(s) 301
ApeKI GCWGC 1 cut(s) 77
BalI TGGCCA 1 cut(s) 303
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 2
BfmI CTRYAG 1 cut(s) 279
BfrI CTTAAG 1 cut(s) 269
BglI GCCNNNNNGGC 1 cut(s) 118
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmcAI AGTACT 1 cut(s) 317
BmsI GCATC 2 cut(s) 71, 241
BsaJI CCNNGG 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 298
BseMII CTCAG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 1 cut(s) 303
BsnI GGCC 1 cut(s) 303
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 249
BspTI CTTAAG 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 298
Bst4CI ACNGT 2 cut(s) 88, 222
BstAFI CTTAAG 1 cut(s) 269
BstDEI CTNAG 1 cut(s) 236
BstMWI GCNNNNNNNGC 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 64
BsuRI GGCC 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 227
Csp6I GTAC 1 cut(s) 316
CviAII CATG 3 cut(s) 49, 117, 146
CviJI RGCY 3 cut(s) 268, 274, 303
CviKI_1 RGCY 3 cut(s) 268, 274, 303
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 1 cut(s) 236
EaeI YGGCCR 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 3 cut(s) 52, 120, 149
FaiI YATR 7 cut(s) 50, 110, 118, 147, 203, 215, 258
FatI CATG 3 cut(s) 48, 116, 145
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 303
Hin1II CATG 3 cut(s) 52, 120, 149
Hpy188I TCNGA 1 cut(s) 246
HpyCH4III ACNGT 2 cut(s) 88, 222
HpyCH4V TGCA 4 cut(s) 4, 48, 176, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 118
HpyF3I CTNAG 1 cut(s) 236
Hsp92II CATG 3 cut(s) 52, 120, 149
LpnPI CCDG 1 cut(s) 223
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 2 cut(s) 71, 241
MaeIII GTNAC 1 cut(s) 82
MboII GAAGA 1 cut(s) 140
MlsI TGGCCA 1 cut(s) 303
MluCI AATT 2 cut(s) 138, 165
MluNI TGGCCA 1 cut(s) 303
Mox20I TGGCCA 1 cut(s) 303
MscI TGGCCA 1 cut(s) 303
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 2 cut(s) 47, 181
Msp20I TGGCCA 1 cut(s) 303
MspCI CTTAAG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 118
NlaIII CATG 3 cut(s) 52, 120, 149
PkrI GCNGC 1 cut(s) 79
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 2 cut(s) 47, 181
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 78
ScaI AGTACT 1 cut(s) 317
SetI ASST 3 cut(s) 242, 276, 300
SfaNI GCATC 2 cut(s) 71, 241
SfcI CTRYAG 1 cut(s) 279
SmiMI CAYNNNNRTG 2 cut(s) 47, 181
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 2 cut(s) 138, 165
SspI AATATT 1 cut(s) 288
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 2 cut(s) 88, 222
TasI AATT 2 cut(s) 138, 165
TatI WGTACW 1 cut(s) 315
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 227
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 31, 131
TspRI CASTG 1 cut(s) 227
Vha464I CTTAAG 1 cut(s) 269
ZrmI AGTACT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.