RchiOBHm_Chr5g0057691

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0030292
Physical Location & Seq
Reverse (-)
61691492 .. 61691878
387 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 387 bp
ATGTCATCTTTTAACTCTGGTCACTCCTTTCTCTCTTTCTCTCCAAGCGAGAGAAAGTCATACCCGCCCCCAAAATGCTTCGCTAGGGCCTCATCCAAACACTCCAAACCCGCGGTGGCTCTGCCACCTGCCCTAGCCACCGGGCCAGTCCCGGCCACGAAGAACAGCCCAAAGGCTAACTCTTCAACCAACCCTCTACCTCCAGGCCAGTCTCGAAAATGGGAGGATTGGGAGCTCCCCTGCTACGTCACCAGCTTCCTCACCATCGTCATCCTCGGCGTTAGACACAATGCGAAGTCCGATCTCACCATCGAGACCTGGGCCCACCAGAAGGCCCTTGAGCGTCTGGAGATCGAGCATGCCTGCCTTTCAGCTGAGTCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.99

Weight (kDa)

8.86

Isoelectric Point (pI)

66.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030292)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0057691
rosa_samantha Rh5CG412300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 136
Acc36I ACCTGC 1 cut(s) 136
AccII CGCG 1 cut(s) 113
AciI CCGC 3 cut(s) 65, 111, 113
AcoI YGGCCR 1 cut(s) 153
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 1 cut(s) 186
AjnI CCWGG 2 cut(s) 202, 317
AluBI AGCT 3 cut(s) 235, 255, 374
AluI AGCT 3 cut(s) 235, 255, 374
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 2 cut(s) 216, 308
AoxI GGCC 6 cut(s) 87, 143, 153, 205, 321, 333
ApaI GGGCCC 1 cut(s) 325
AspS9I GGNCC 5 cut(s) 87, 143, 321, 322, 334
AsuC2I CCSGG 2 cut(s) 142, 152
AsuHPI GGTGA 3 cut(s) 241, 253, 298
BaeGI GKGCMC 1 cut(s) 325
BanII GRGCYC 2 cut(s) 237, 325
Bbv12I GWGCWC 1 cut(s) 237
BccI CCATC 2 cut(s) 272, 317
BciT130I CCWGG 2 cut(s) 204, 319
BcnI CCSGG 2 cut(s) 142, 152
BcoDI GTCTC 2 cut(s) 216, 308
BfaI CTAG 2 cut(s) 84, 134
BfuAI ACCTGC 1 cut(s) 136
Bme1390I CCNGG 4 cut(s) 142, 152, 204, 319
BmgT120I GGNCC 5 cut(s) 87, 143, 321, 322, 334
BmiI GGNNCC 1 cut(s) 323
BmrFI CCNGG 4 cut(s) 142, 152, 204, 319
BpmI CTGGAG 2 cut(s) 186, 368
BpuEI CTTGAG 1 cut(s) 359
BpuMI CCSGG 2 cut(s) 142, 152
BsaI GGTCTC 1 cut(s) 308
BsaJI CCNNGG 3 cut(s) 111, 274, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse1I ACTGG 2 cut(s) 146, 208
BseBI CCWGG 2 cut(s) 204, 319
BseDI CCNNGG 3 cut(s) 111, 274, 318
BseGI GGATG 2 cut(s) 92, 270
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 2 cut(s) 146, 208
BseSI GKGCMC 1 cut(s) 325
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 6 cut(s) 89, 145, 155, 207, 323, 335
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 2 cut(s) 141, 152
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 331
BsmAI GTCTC 2 cut(s) 216, 308
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 6 cut(s) 89, 145, 155, 207, 323, 335
Bso31I GGTCTC 1 cut(s) 308
Bsp120I GGGCCC 1 cut(s) 321
Bsp1286I GDGCHC 2 cut(s) 237, 325
Bsp143I GATC 2 cut(s) 301, 351
BspACI CCGC 3 cut(s) 65, 111, 113
BspANI GGCC 6 cut(s) 89, 145, 155, 207, 323, 335
BspCNI CTCAG 1 cut(s) 367
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 323
BspMI ACCTGC 1 cut(s) 136
BspTNI GGTCTC 1 cut(s) 308
BsrI ACTGG 2 cut(s) 146, 208
BssECI CCNNGG 3 cut(s) 111, 274, 318
BssMI GATC 2 cut(s) 301, 351
Bst2UI CCWGG 2 cut(s) 204, 319
Bst6I CTCTTC 1 cut(s) 187
BstC8I GCNNGC 2 cut(s) 360, 364
BstDEI CTNAG 1 cut(s) 375
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 2 cut(s) 92, 270
BstFNI CGCG 1 cut(s) 113
BstKTI GATC 2 cut(s) 304, 354
BstMAI GTCTC 2 cut(s) 216, 308
BstMBI GATC 2 cut(s) 301, 351
BstNI CCWGG 2 cut(s) 204, 319
BstNSI RCATGY 1 cut(s) 362
BstSCI CCNGG 4 cut(s) 140, 150, 202, 317
BstSLI GKGCMC 1 cut(s) 325
BstUI CGCG 1 cut(s) 113
BsuRI GGCC 6 cut(s) 89, 145, 155, 207, 323, 335
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 2 cut(s) 92, 270
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 360, 364
Cfr13I GGNCC 5 cut(s) 87, 143, 321, 322, 334
Cfr42I CCGCGG 1 cut(s) 114
CseI GACGC 1 cut(s) 332
CviAII CATG 1 cut(s) 359
DdeI CTNAG 1 cut(s) 375
DpnI GATC 2 cut(s) 303, 353
DpnII GATC 2 cut(s) 301, 351
EaeI YGGCCR 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 187
Ecl136II GAGCTC 1 cut(s) 235
Eco24I GRGCYC 2 cut(s) 237, 325
Eco31I GGTCTC 1 cut(s) 308
Eco53kI GAGCTC 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 235
EcoO109I RGGNCCY 2 cut(s) 87, 334
EcoRII CCWGG 2 cut(s) 202, 317
EcoT38I GRGCYC 2 cut(s) 237, 325
FaeI CATG 1 cut(s) 362
FaiI YATR 2 cut(s) 61, 360
FaqI GGGAC 1 cut(s) 134
FatI CATG 1 cut(s) 358
FauI CCCGC 2 cut(s) 72, 118
FokI GGATG 2 cut(s) 79, 257
FriOI GRGCYC 2 cut(s) 237, 325
FspBI CTAG 2 cut(s) 84, 134
GsuI CTGGAG 2 cut(s) 186, 368
HaeIII GGCC 6 cut(s) 89, 145, 155, 207, 323, 335
HapII CCGG 2 cut(s) 141, 152
HgaI GACGC 1 cut(s) 332
Hin1II CATG 1 cut(s) 362
HinfI GANTC 1 cut(s) 377
HpaII CCGG 2 cut(s) 141, 152
HphI GGTGA 3 cut(s) 241, 253, 298
Hpy188I TCNGA 2 cut(s) 301, 382
Hpy188III TCNNGA 3 cut(s) 213, 313, 347
HpyAV CCTTC 1 cut(s) 325
HpyCH4IV ACGT 1 cut(s) 246
HpyF3I CTNAG 1 cut(s) 375
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 1 cut(s) 362
KspI CCGCGG 1 cut(s) 114
Kzo9I GATC 2 cut(s) 301, 351
LmnI GCTCC 2 cut(s) 232, 240
MaeI CTAG 2 cut(s) 84, 134
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 2 cut(s) 20, 247
MalI GATC 2 cut(s) 303, 353
MboI GATC 2 cut(s) 301, 351
MboII GAAGA 2 cut(s) 172, 174
MhlI GDGCHC 2 cut(s) 237, 325
MlyI GAGTC 1 cut(s) 386
MnlI CCTC 6 cut(s) 100, 204, 210, 217, 269, 284
MseI TTAA 1 cut(s) 12
MspA1I CMGCKG 2 cut(s) 113, 374
MspI CCGG 2 cut(s) 141, 152
MspR9I CCNGG 4 cut(s) 142, 152, 204, 319
MvaI CCWGG 2 cut(s) 204, 319
MvnI CGCG 1 cut(s) 113
NciI CCSGG 2 cut(s) 142, 152
NdeII GATC 2 cut(s) 301, 351
NlaIII CATG 1 cut(s) 362
NlaIV GGNNCC 1 cut(s) 323
NmeAIII GCCGAG 1 cut(s) 255
NmuCI GTSAC 2 cut(s) 20, 247
NspI RCATGY 1 cut(s) 362
PaeI GCATGC 1 cut(s) 362
PaqCI CACCTGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Psp124BI GAGCTC 1 cut(s) 237
Psp6I CCWGG 2 cut(s) 202, 317
PspGI CCWGG 2 cut(s) 202, 317
PspN4I GGNNCC 1 cut(s) 323
PspOMI GGGCCC 1 cut(s) 321
PspPI GGNCC 5 cut(s) 87, 143, 321, 322, 334
PvuII CAGCTG 1 cut(s) 374
SacI GAGCTC 1 cut(s) 237
SacII CCGCGG 1 cut(s) 114
SaqAI TTAA 1 cut(s) 12
Sau3AI GATC 2 cut(s) 301, 351
Sau96I GGNCC 5 cut(s) 87, 143, 321, 322, 334
SchI GAGTC 1 cut(s) 386
ScrFI CCNGG 4 cut(s) 142, 152, 204, 319
SduI GDGCHC 2 cut(s) 237, 325
SetI ASST 7 cut(s) 130, 202, 237, 249, 257, 320, 376
Sfr303I CCGCGG 1 cut(s) 114
SgrBI CCGCGG 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
SphI GCATGC 1 cut(s) 362
SsiI CCGC 3 cut(s) 65, 111, 113
SspMI CTAG 2 cut(s) 84, 134
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 4 cut(s) 140, 150, 202, 317
TaiI ACGT 1 cut(s) 249
TaqI TCGA 3 cut(s) 214, 312, 354
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TseFI GTSAC 2 cut(s) 20, 247
Tsp45I GTSAC 2 cut(s) 20, 247
XceI RCATGY 1 cut(s) 362
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
XspI CTAG 2 cut(s) 84, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.