RchiOBHm_Chr5g0059361

TATA-box-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
64277648 .. 64278143
496 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 441 bp
ATGCAGAATTCAATTCCCAAGTGTTTGCATTCCTTGATAATGAGAGTGAGAGACCCAAAAGCCACAGTTTTGATTTTCGCTTCCGGGAAAATGGTGTGCAGTGCCAAAAGCGAAGAGCTGTCGCAACTCGCAGCTAGGAAGTGTGCACGTACCATCCTGAAGATGGGTTTCAATGCTAAGTTTAAGGACTTCAAGATCCAGAACATTGTTGCCAACTGTGATGTTAGATTCCCGATCAGACTCGAAGGGCTGAGGTACCACGTGAACGAGCCCAAGATTACTCTTCTTGTATTCGCGTCGGGAAAAGTTGTTATCACAGGTGCAAAGTGTAGAGAAGACTTGCATAAGGCCTTTGAGCTCATATACCTTGGCTATGTTTGCATAAGGCCTTGGACCTTGTTGCCGGAAGTTCGCAAAGAGGTCACTGGAGACTTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203
Pfam Domains
Protein Families
TBP

Protein Analysis

146

Amino Acids

16.62

Weight (kDa)

9.6

Isoelectric Point (pI)

26.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBP PF00352 8 - 54 4e-12 Transcription factor TFIID (or TATA-binding protein, TBP)
TBP PF00352 83 - 122 5.3e-12 Transcription factor TFIID (or TATA-binding protein, TBP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 255
AccII CGCG 1 cut(s) 296
AclWI GGATC 1 cut(s) 190
AcsI RAATTY 1 cut(s) 7
AcuI CTGAAG 1 cut(s) 179
AcvI CACGTG 1 cut(s) 262
AfaI GTAC 2 cut(s) 151, 257
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 3 cut(s) 12, 172, 193
AluBI AGCT 3 cut(s) 118, 134, 358
AluI AGCT 3 cut(s) 118, 134, 358
Alw21I GWGCWC 2 cut(s) 148, 360
Alw26I GTCTC 2 cut(s) 45, 423
Alw44I GTGCAC 1 cut(s) 144
AlwI GGATC 1 cut(s) 190
AoxI GGCC 2 cut(s) 348, 386
ApaLI GTGCAC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 7
Asp718I GGTACC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 393
AsuC2I CCSGG 1 cut(s) 85
AvaII GGWCC 1 cut(s) 393
BaeGI GKGCMC 1 cut(s) 148
BanI GGYRCC 1 cut(s) 255
BanII GRGCYC 2 cut(s) 273, 360
BbrPI CACGTG 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 342
Bbv12I GWGCWC 2 cut(s) 148, 360
BbvCI CCTCAGC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 143
BccI CCATC 2 cut(s) 157, 161
BcnI CCSGG 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 45, 423
BfaI CTAG 1 cut(s) 135
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 85
Bme18I GGWCC 1 cut(s) 393
BmgT120I GGNCC 1 cut(s) 393
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 342
Bpu10I CCTNAGC 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 85
BsaAI YACGTR 2 cut(s) 149, 262
BsaI GGTCTC 1 cut(s) 45
BsaJI CCNNGG 2 cut(s) 367, 389
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 430
BseDI CCNNGG 2 cut(s) 367, 389
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 430
BseSI GKGCMC 1 cut(s) 148
BseXI GCAGC 1 cut(s) 143
BsgI GTGCAG 1 cut(s) 118
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 2 cut(s) 350, 388
BshNI GGYRCC 1 cut(s) 255
BsiHKAI GWGCWC 2 cut(s) 148, 360
BsiSI CCGG 2 cut(s) 84, 404
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 2 cut(s) 45, 423
BsmI GAATGC 1 cut(s) 28
BsnI GGCC 2 cut(s) 350, 388
Bso31I GGTCTC 1 cut(s) 45
Bsp1286I GDGCHC 3 cut(s) 148, 273, 360
Bsp143I GATC 2 cut(s) 195, 234
BspANI GGCC 2 cut(s) 350, 388
BspCNI CTCAG 1 cut(s) 243
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 257
BspPI GGATC 1 cut(s) 190
BspQI GCTCTTC 1 cut(s) 108
BspT107I GGYRCC 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 45
BsrI ACTGG 1 cut(s) 430
BssECI CCNNGG 2 cut(s) 367, 389
BssMI GATC 2 cut(s) 195, 234
BssT1I CCWWGG 2 cut(s) 367, 389
Bst4CI ACNGT 2 cut(s) 67, 218
Bst6I CTCTTC 2 cut(s) 108, 288
BstBAI YACGTR 2 cut(s) 149, 262
BstDEI CTNAG 2 cut(s) 177, 251
BstF5I GGATG 1 cut(s) 153
BstFNI CGCG 1 cut(s) 296
BstKTI GATC 2 cut(s) 198, 237
BstMAI GTCTC 2 cut(s) 45, 423
BstMBI GATC 2 cut(s) 195, 234
BstMWI GCNNNNNNNGC 1 cut(s) 378
BstSCI CCNGG 1 cut(s) 83
BstSLI GKGCMC 1 cut(s) 148
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 143
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BsuRI GGCC 2 cut(s) 350, 388
BtsCI GGATG 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 2 cut(s) 106, 423
Cfr13I GGNCC 1 cut(s) 393
CseI GACGC 1 cut(s) 285
Csp6I GTAC 2 cut(s) 150, 256
CviJI RGCY 9 cut(s) 62, 118, 134, 250, 271, 350, 358, 372, 388
CviKI_1 RGCY 9 cut(s) 62, 118, 134, 250, 271, 350, 358, 372, 388
CviQI GTAC 2 cut(s) 150, 256
DdeI CTNAG 2 cut(s) 177, 251
DpnI GATC 2 cut(s) 197, 236
DpnII GATC 2 cut(s) 195, 234
Eam1104I CTCTTC 2 cut(s) 108, 288
EarI CTCTTC 2 cut(s) 108, 288
Ecl136II GAGCTC 1 cut(s) 358
Eco130I CCWWGG 2 cut(s) 367, 389
Eco147I AGGCCT 2 cut(s) 350, 388
Eco24I GRGCYC 2 cut(s) 273, 360
Eco31I GGTCTC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 393
Eco53kI GAGCTC 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 179
Eco72I CACGTG 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 358
EcoRI GAATTC 1 cut(s) 7
EcoT14I CCWWGG 2 cut(s) 367, 389
EcoT38I GRGCYC 2 cut(s) 273, 360
ErhI CCWWGG 2 cut(s) 367, 389
FaiI YATR 5 cut(s) 345, 362, 364, 375, 383
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 2 cut(s) 273, 360
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 135
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 2 cut(s) 350, 388
HapII CCGG 2 cut(s) 84, 404
HgaI GACGC 1 cut(s) 285
HinfI GANTC 2 cut(s) 228, 240
HpaII CCGG 2 cut(s) 84, 404
Hpy166II GTNNAC 2 cut(s) 146, 265
Hpy188I TCNGA 1 cut(s) 239
Hpy188III TCNNGA 5 cut(s) 157, 193, 199, 232, 300
Hpy8I GTNNAC 2 cut(s) 146, 265
Hpy99I CGWCG 1 cut(s) 301
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 2 cut(s) 67, 218
HpyCH4IV ACGT 2 cut(s) 148, 261
HpyCH4V TGCA 7 cut(s) 4, 28, 99, 146, 323, 343, 381
HpyF10VI GCNNNNNNNGC 1 cut(s) 378
HpyF3I CTNAG 2 cut(s) 177, 251
HpySE526I ACGT 2 cut(s) 148, 261
KpnI GGTACC 1 cut(s) 259
Kzo9I GATC 2 cut(s) 195, 234
LguI GCTCTTC 1 cut(s) 108
LpnPI CCDG 6 cut(s) 97, 170, 212, 303, 411, 417
Lsp1109I GCAGC 1 cut(s) 143
MaeI CTAG 1 cut(s) 135
MaeII ACGT 2 cut(s) 148, 261
MaeIII GTNAC 1 cut(s) 421
MalI GATC 2 cut(s) 197, 236
MboI GATC 2 cut(s) 195, 234
MboII GAAGA 4 cut(s) 125, 172, 275, 347
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 3 cut(s) 148, 273, 360
MluCI AATT 2 cut(s) 7, 12
MlyI GAGTC 1 cut(s) 234
MnlI CCTC 2 cut(s) 246, 412
MseI TTAA 2 cut(s) 183, 439
MspI CCGG 2 cut(s) 84, 404
MspR9I CCNGG 1 cut(s) 85
Mva1269I GAATGC 1 cut(s) 28
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 378
NciI CCSGG 1 cut(s) 85
NdeII GATC 2 cut(s) 195, 234
NlaIV GGNNCC 1 cut(s) 257
NmuCI GTSAC 1 cut(s) 421
PceI AGGCCT 2 cut(s) 350, 388
PciSI GCTCTTC 1 cut(s) 108
PctI GAATGC 1 cut(s) 28
PfeI GAWTC 1 cut(s) 228
PfoI TCCNGGA 1 cut(s) 83
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 234
PmaCI CACGTG 1 cut(s) 262
PmlI CACGTG 1 cut(s) 262
PpsI GAGTC 1 cut(s) 234
Ppu21I YACGTR 2 cut(s) 149, 262
Psp124BI GAGCTC 1 cut(s) 360
PspCI CACGTG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 1 cut(s) 393
PsuI RGATCY 1 cut(s) 195
RsaI GTAC 2 cut(s) 151, 257
RsaNI GTAC 2 cut(s) 150, 256
SacI GAGCTC 1 cut(s) 360
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 2 cut(s) 183, 439
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 2 cut(s) 195, 234
Sau96I GGNCC 1 cut(s) 393
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 1 cut(s) 85
SduI GDGCHC 3 cut(s) 148, 273, 360
SinI GGWCC 1 cut(s) 393
Sse9I AATT 2 cut(s) 7, 12
SseBI AGGCCT 2 cut(s) 350, 388
SspMI CTAG 1 cut(s) 135
SstI GAGCTC 1 cut(s) 360
StuI AGGCCT 2 cut(s) 350, 388
StyD4I CCNGG 1 cut(s) 83
StyI CCWWGG 2 cut(s) 367, 389
TaaI ACNGT 2 cut(s) 67, 218
TaiI ACGT 2 cut(s) 151, 264
TaqI TCGA 1 cut(s) 243
TasI AATT 2 cut(s) 7, 12
TfiI GAWTC 1 cut(s) 228
Tru1I TTAA 2 cut(s) 183, 439
Tru9I TTAA 2 cut(s) 183, 439
TscAI CASTG 2 cut(s) 106, 430
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 421
TspRI CASTG 2 cut(s) 106, 430
VneI GTGCAC 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 393
XapI RAATTY 1 cut(s) 7
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.