Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

65394650 .. 65394964

Gene Structure 315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGTATATGTGGGATATATGGATGCAAAAGTGTTTTGGAAAGTGGCAGCATCGGAAATGGATTTTCGTCCTAGCAGAATGGGTGTGGTTGCGAAGCATGTTGAGGCTTTCATTACAGAGTATTTCTACCAGAATCCGCTCAGTCAAGTAGGCCTTGTGACTATAAAAGATGCTTTCATAGAGAGTATTTCTACCAGAATCTGCTCAGTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko05203 map03022 map03420 map05203

Pfam Domains

Protein Families

C1_4 Ssl1

Protein Analysis

71

Amino Acids

8.1

Weight (kDa)

7.87

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ssl1	PF04056	16 - 64	4.7e-14	Ssl1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	139
AciI	CCGC	1 cut(s)	137
AlwNI	CAGNNNCTG	1 cut(s)	201
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	72
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
BmsI	GCATC	3 cut(s)	13, 59, 160
BseGI	GGATG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	154
BseXI	GCAGC	1 cut(s)	59
BshFI	GGCC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	153
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	153
BsrBI	CCGCTC	1 cut(s)	139
BstDEI	CTNAG	2 cut(s)	140, 205
BstF5I	GGATG	1 cut(s)	28
BstNSI	RCATGY	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	28
CaiI	CAGNNNCTG	1 cut(s)	201
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	2 cut(s)	107, 153
CviKI_1	RGCY	2 cut(s)	107, 153
DdeI	CTNAG	2 cut(s)	140, 205
Eco147I	AGGCCT	1 cut(s)	153
FaeI	CATG	1 cut(s)	101
FaiI	YATR	7 cut(s)	7, 9, 18, 20, 99, 164, 179
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FatI	CATG	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	101
HinfI	GANTC	2 cut(s)	133, 198
Hpy188I	TCNGA	1 cut(s)	55
HpyCH4V	TGCA	1 cut(s)	26
HpyF3I	CTNAG	2 cut(s)	140, 205
Hsp92II	CATG	1 cut(s)	101
LpnPI	CCDG	2 cut(s)	143, 208
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	3 cut(s)	13, 59, 160
MaeI	CTAG	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	157
MbiI	CCGCTC	1 cut(s)	139
MnlI	CCTC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	101
PceI	AGGCCT	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	133, 198
PkrI	GCNGC	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	201
SatI	GCNGC	1 cut(s)	48
SfaNI	GCATC	3 cut(s)	13, 59, 160
SgeI	CNNG	6 cut(s)	84, 110, 142, 158, 167, 207
SseBI	AGGCCT	1 cut(s)	153
SsiI	CCGC	1 cut(s)	137
SspMI	CTAG	1 cut(s)	72
StuI	AGGCCT	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	133, 198
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	100, 166
XceI	RCATGY	1 cut(s)	101
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.