RchiOBHm_Chr5g0060951

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Forward (+)
66268011 .. 66268532
522 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 159 bp
ATGCAAAGAGGTGCTTTCCGTGATTCTTTGGTGGGCTCAACTCTCCTCTCCATTTTTCCGCTGCTAAAGGGCAACAAGATTGTTTCGTTGCTTCTGGATAATGGAGCTGATGTAAATTTCAGAAATTACTGTGGGCAGGTATGCCGAAATCCCTTCTAG

Protein Analysis

52

Amino Acids

5.76

Weight (kDa)

9.38

Isoelectric Point (pI)

4.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 127
AciI CCGC 1 cut(s) 59
AcsI RAATTY 1 cut(s) 115
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 61
ApoI RAATTY 1 cut(s) 115
BanII GRGCYC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 48
BfaI CTAG 1 cut(s) 157
BfuAI ACCTGC 1 cut(s) 127
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 38
BspACI CCGC 1 cut(s) 59
BspMI ACCTGC 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 48
BveI ACCTGC 1 cut(s) 127
CviJI RGCY 2 cut(s) 36, 107
CviKI_1 RGCY 2 cut(s) 36, 107
Eco24I GRGCYC 1 cut(s) 38
EcoT38I GRGCYC 1 cut(s) 38
FaiI YATR 1 cut(s) 142
FalI AAGNNNNNCTT 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 62
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 62
FspBI CTAG 1 cut(s) 157
GluI GCNGC 1 cut(s) 62
HinfI GANTC 1 cut(s) 23
Hpy188I TCNGA 1 cut(s) 122
Hpy188III TCNNGA 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 1 cut(s) 4
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 2 cut(s) 80, 122
Lsp1109I GCAGC 1 cut(s) 48
MaeI CTAG 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 2 cut(s) 115, 124
MnlI CCTC 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 61
PfeI GAWTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 63
SatI GCNGC 1 cut(s) 62
SduI GDGCHC 1 cut(s) 38
SetI ASST 3 cut(s) 13, 109, 141
SgeI CNNG 4 cut(s) 32, 88, 107, 149
Sse9I AATT 2 cut(s) 115, 124
SsiI CCGC 1 cut(s) 59
SspMI CTAG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 131
TasI AATT 2 cut(s) 115, 124
TfiI GAWTC 1 cut(s) 23
TseI GCWGC 1 cut(s) 61
TspGWI ACGGA 1 cut(s) 8
XapI RAATTY 1 cut(s) 115
XspI CTAG 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.