RchiOBHm_Chr5g0062961

Converts zeaxanthin into antheraxanthin and subsequently violaxanthin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
68751076 .. 68751720
645 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 147 bp
ATGAAGTTTAGGATACCACATCCAAGAAGAGTTGGTGGGAGAGTTTTTATTGACAAGGCAATGCCCTTGAAACTGAGTTGGATCTTAGGTGGTAACAGCTCAAAACTTGAAGGAAGGCCACCAAGTTGCAGGCTTCACAGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
FAD_binding_3 FHA NAD_binding_8

Protein Analysis

48

Amino Acids

5.44

Weight (kDa)

11.38

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 89
AgsI TTSAA 2 cut(s) 70, 110
AluBI AGCT 1 cut(s) 99
AluI AGCT 1 cut(s) 99
AlwI GGATC 1 cut(s) 89
AoxI GGCC 1 cut(s) 116
BciVI GTATCC 1 cut(s) 6
BfuI GTATCC 1 cut(s) 6
Bse3DI GCAATG 1 cut(s) 66
BseGI GGATG 1 cut(s) 19
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 65
BshFI GGCC 1 cut(s) 118
BsnI GGCC 1 cut(s) 118
Bsp143I GATC 1 cut(s) 81
BspANI GGCC 1 cut(s) 118
BspCNI CTCAG 1 cut(s) 66
BspPI GGATC 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 66
BssMI GATC 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 2 cut(s) 74, 85
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 1 cut(s) 84
BstMBI GATC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuI GTATCC 1 cut(s) 6
BsuRI GGCC 1 cut(s) 118
BtsCI GGATG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 131
CviJI RGCY 3 cut(s) 99, 118, 133
CviKI_1 RGCY 3 cut(s) 99, 118, 133
DdeI CTNAG 2 cut(s) 74, 85
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
FokI GGATG 1 cut(s) 6
HaeIII GGCC 1 cut(s) 118
HpyAV CCTTC 2 cut(s) 104, 108
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 1 cut(s) 129
HpyF3I CTNAG 2 cut(s) 74, 85
Kzo9I GATC 1 cut(s) 81
LpnPI CCDG 1 cut(s) 115
MaeIII GTNAC 2 cut(s) 92, 140
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 1 cut(s) 39
MflI RGATCY 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 59
NdeII GATC 1 cut(s) 81
NmuCI GTSAC 1 cut(s) 140
PsuI RGATCY 1 cut(s) 81
Sau3AI GATC 1 cut(s) 81
SetI ASST 2 cut(s) 91, 101
SgeI CNNG 6 cut(s) 36, 67, 79, 119, 135, 142
TaaI ACNGT 1 cut(s) 140
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.