RchiOBHm_Chr5g0063661

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
N/A
Physical Location & Seq
Reverse (-)
69320368 .. 69333429
13062 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
ATGTCAGGCCGTGGTAAGGGAGGCAAGGGATTGGGCAAAGGAGGAGCCAAGCGTCACAGGAAGGTTCTCAGGGATAACATCCAGGGCATCACCAAGCCTGCCATTCGCCGTTTGGCTCGCAGAGGCGGCGTCAAGCGTATCTCCGCTCTGAAGGTTCTGAGGGATAACATCCAGGGCATCACCAAGCCCGCCATTCGCCGTTTGGCTCGCAGAGGCGGCGTCAAGCGTATCTCCGGTCTCATCTACGAAGAGACCCGAGGTGTCCTCAAGATCTTCCTCGAGAACGTCATCCGTGACGCCGTTACCTACACCGAGCACGCCCGGAGGAAGACCGTCACCGCCATGGATGTCGTCTATGCTCTCAAGAGGCAAGGAAGGACCCTCTACGGGTTTGGGGGTTAA

Protein Analysis

133

Amino Acids

14.75

Weight (kDa)

11.81

Isoelectric Point (pI)

52.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CENP-T_C PF15511 74 - 126 6.8e-08 Centromere kinetochore component CENP-T histone fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 146
AciI CCGC 5 cut(s) 126, 144, 189, 216, 339
AcuI CTGAAG 1 cut(s) 170
AcyI GRCGYC 3 cut(s) 129, 219, 297
AfiI CCNNNNNNNGG 2 cut(s) 16, 387
AjnI CCWGG 2 cut(s) 81, 171
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 2 cut(s) 242, 245
Ama87I CYCGRG 2 cut(s) 255, 278
AoxI GGCC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 378
AsuC2I CCSGG 1 cut(s) 322
AsuHPI GGTGA 3 cut(s) 82, 172, 328
AvaI CYCGRG 2 cut(s) 255, 278
AvaII GGWCC 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 318
BceAI ACGGC 3 cut(s) 93, 183, 284
BciT130I CCWGG 2 cut(s) 83, 173
BcnI CCSGG 1 cut(s) 322
BcoDI GTCTC 2 cut(s) 242, 245
BglII AGATCT 1 cut(s) 270
BisI GCNGC 2 cut(s) 127, 217
BlsI GCNGC 2 cut(s) 128, 218
Bme1390I CCNGG 3 cut(s) 83, 173, 322
Bme18I GGWCC 1 cut(s) 378
BmeT110I CYCGRG 2 cut(s) 255, 278
BmgT120I GGNCC 1 cut(s) 378
BmiI GGNNCC 2 cut(s) 46, 380
BmrFI CCNGG 3 cut(s) 83, 173, 322
BmsI GCATC 2 cut(s) 96, 186
BpiI GAAGAC 1 cut(s) 335
BplI GAGNNNNNCTC 2 cut(s) 249, 281
BpuEI CTTGAG 2 cut(s) 251, 347
BpuMI CCSGG 1 cut(s) 322
BsaHI GRCGYC 3 cut(s) 129, 219, 297
BsaI GGTCTC 2 cut(s) 242, 245
BsaJI CCNNGG 5 cut(s) 10, 82, 172, 256, 342
BsaWI WCCGGW 1 cut(s) 233
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 387
BseBI CCWGG 2 cut(s) 83, 173
BseDI CCNNGG 5 cut(s) 10, 82, 172, 256, 342
BseGI GGATG 4 cut(s) 78, 168, 288, 352
BseLI CCNNNNNNNGG 2 cut(s) 16, 387
BseMII CTCAG 2 cut(s) 82, 149
BseRI GAGGAG 1 cut(s) 57
BshFI GGCC 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 318
BsiHKCI CYCGRG 2 cut(s) 255, 278
BsiSI CCGG 2 cut(s) 234, 322
BslI CCNNNNNNNGG 2 cut(s) 16, 387
BsmAI GTCTC 2 cut(s) 242, 245
BsnI GGCC 1 cut(s) 9
Bso31I GGTCTC 2 cut(s) 242, 245
BsoBI CYCGRG 2 cut(s) 255, 278
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 1 cut(s) 270
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 5 cut(s) 126, 144, 189, 216, 339
BspANI GGCC 1 cut(s) 9
BspCNI CTCAG 2 cut(s) 81, 150
BspLI GGNNCC 2 cut(s) 46, 380
BspTNI GGTCTC 2 cut(s) 242, 245
BsrBI CCGCTC 1 cut(s) 146
BssECI CCNNGG 5 cut(s) 10, 82, 172, 256, 342
BssMI GATC 1 cut(s) 270
BssNI GRCGYC 3 cut(s) 129, 219, 297
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 2 cut(s) 83, 173
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 243
BstACI GRCGYC 3 cut(s) 129, 219, 297
BstC8I GCNNGC 5 cut(s) 99, 118, 189, 208, 318
BstDEI CTNAG 2 cut(s) 68, 158
BstDSI CCRYGG 2 cut(s) 10, 342
BstF5I GGATG 4 cut(s) 78, 168, 288, 352
BstKTI GATC 1 cut(s) 273
BstMAI GTCTC 2 cut(s) 242, 245
BstMBI GATC 1 cut(s) 270
BstMWI GCNNNNNNNGC 2 cut(s) 126, 216
BstNI CCWGG 2 cut(s) 83, 173
BstSCI CCNGG 3 cut(s) 81, 171, 320
BstV2I GAAGAC 1 cut(s) 335
BstX2I RGATCY 1 cut(s) 270
BstYI RGATCY 1 cut(s) 270
BsuRI GGCC 1 cut(s) 9
BtgI CCRYGG 2 cut(s) 10, 342
BtsCI GGATG 4 cut(s) 78, 168, 288, 352
Cac8I GCNNGC 5 cut(s) 99, 118, 189, 208, 318
Cfr13I GGNCC 1 cut(s) 378
CseI GACGC 4 cut(s) 41, 118, 208, 305
CviAII CATG 1 cut(s) 343
CviJI RGCY 6 cut(s) 9, 47, 97, 116, 187, 206
CviKI_1 RGCY 6 cut(s) 9, 47, 97, 116, 187, 206
DdeI CTNAG 2 cut(s) 68, 158
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 342
Eco31I GGTCTC 2 cut(s) 242, 245
Eco47I GGWCC 1 cut(s) 378
Eco57I CTGAAG 1 cut(s) 170
Eco88I CYCGRG 2 cut(s) 255, 278
EcoO109I RGGNCCY 1 cut(s) 378
EcoRII CCWGG 2 cut(s) 81, 171
EcoT14I CCWWGG 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 1 cut(s) 346
FaiI YATR 2 cut(s) 344, 357
FatI CATG 1 cut(s) 342
FauI CCCGC 1 cut(s) 196
Fnu4HI GCNGC 2 cut(s) 127, 217
FokI GGATG 4 cut(s) 65, 155, 275, 359
Fsp4HI GCNGC 2 cut(s) 127, 217
GluI GCNGC 2 cut(s) 127, 217
HaeIII GGCC 1 cut(s) 9
HapII CCGG 2 cut(s) 234, 322
HgaI GACGC 4 cut(s) 41, 118, 208, 305
Hin1I GRCGYC 3 cut(s) 129, 219, 297
Hin1II CATG 1 cut(s) 346
HpaII CCGG 2 cut(s) 234, 322
HphI GGTGA 3 cut(s) 82, 172, 328
Hpy188I TCNGA 2 cut(s) 150, 159
Hpy188III TCNNGA 3 cut(s) 268, 280, 364
HpyAV CCTTC 3 cut(s) 55, 145, 369
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4IV ACGT 1 cut(s) 285
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 216
HpyF3I CTNAG 2 cut(s) 68, 158
HpySE526I ACGT 1 cut(s) 285
Hsp92I GRCGYC 3 cut(s) 129, 219, 297
Hsp92II CATG 1 cut(s) 346
Kzo9I GATC 1 cut(s) 270
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 9 cut(s) 43, 55, 68, 95, 111, 158, 185, 247, 335
LweI GCATC 2 cut(s) 96, 186
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 4 cut(s) 53, 293, 301, 334
MalI GATC 1 cut(s) 272
MbiI CCGCTC 1 cut(s) 146
MboI GATC 1 cut(s) 270
MboII GAAGA 3 cut(s) 260, 265, 340
MflI RGATCY 1 cut(s) 270
MhlI GDGCHC 1 cut(s) 318
MseI TTAA 1 cut(s) 400
MslI CAYNNNNRTG 1 cut(s) 341
MspI CCGG 2 cut(s) 234, 322
MspR9I CCNGG 3 cut(s) 83, 173, 322
MvaI CCWGG 2 cut(s) 83, 173
MwoI GCNNNNNNNGC 2 cut(s) 126, 216
NciI CCSGG 1 cut(s) 322
NcoI CCATGG 1 cut(s) 342
NdeII GATC 1 cut(s) 270
NlaIII CATG 1 cut(s) 346
NlaIV GGNNCC 2 cut(s) 46, 380
NmuCI GTSAC 3 cut(s) 53, 293, 334
PaeR7I CTCGAG 1 cut(s) 278
PkrI GCNGC 2 cut(s) 128, 218
PpuMI RGGWCCY 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 378
Psp6I CCWGG 2 cut(s) 81, 171
PspGI CCWGG 2 cut(s) 81, 171
PspN4I GGNNCC 2 cut(s) 46, 380
PspPI GGNCC 1 cut(s) 378
PspPPI RGGWCCY 1 cut(s) 378
PsuI RGATCY 1 cut(s) 270
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 1 cut(s) 400
SatI GCNGC 2 cut(s) 127, 217
Sau3AI GATC 1 cut(s) 270
Sau96I GGNCC 1 cut(s) 378
ScrFI CCNGG 3 cut(s) 83, 173, 322
SduI GDGCHC 1 cut(s) 318
SetI ASST 5 cut(s) 66, 156, 262, 288, 308
SfaNI GCATC 2 cut(s) 96, 186
Sfr274I CTCGAG 1 cut(s) 278
SinI GGWCC 1 cut(s) 378
SlaI CTCGAG 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 3 cut(s) 266, 278, 362
SmoI CTYRAG 3 cut(s) 266, 278, 362
SsiI CCGC 5 cut(s) 126, 144, 189, 216, 339
StyD4I CCNGG 3 cut(s) 81, 171, 320
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 334
TaiI ACGT 1 cut(s) 288
TaqI TCGA 1 cut(s) 279
TauI GCSGC 2 cut(s) 129, 219
Tru1I TTAA 1 cut(s) 400
Tru9I TTAA 1 cut(s) 400
TseFI GTSAC 3 cut(s) 53, 293, 334
Tsp45I GTSAC 3 cut(s) 53, 293, 334
TspGWI ACGGA 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 378
XcmI CCANNNNNNNNNTGG 2 cut(s) 109, 199
XhoI CTCGAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.